Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0066
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   1.3  
02_04_0276 + 21491150-21492761,21492891-21492947,21493817-214938...    28   6.9  
01_01_1137 + 9017211-9018584                                           28   6.9  
10_08_0788 + 20553587-20553726,20554131-20554196,20554695-205549...    28   9.1  

>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -1

Query: 230 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 96
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>02_04_0276 +
           21491150-21492761,21492891-21492947,21493817-21493870,
           21493994-21494022
          Length = 583

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = -1

Query: 317 RTFGSCTRPSGRWCEATIRGICLNASKAEAS--LAESGKDMLTVEPRESG--GSKQCDFT 150
           R  GS  RP    C A I+ +  +   AEA   LA  G D++      +G  G+ Q D  
Sbjct: 86  RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAA 145

Query: 149 SRV 141
            R+
Sbjct: 146 RRL 148


>01_01_1137 + 9017211-9018584
          Length = 457

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 545 PVVTFLALLLKTLYTKGSIGRAFAVPM-RTEHLDQASFCLLLHARFLSSLSW 697
           P   FL LL +  Y  G+ GR   V M   EH+ + +F   LH R   +  W
Sbjct: 366 PTFRFLDLLQRVFY-GGNAGREALVEMCADEHVQRRTFDSYLHKRMAPAEPW 416


>10_08_0788 +
           20553587-20553726,20554131-20554196,20554695-20554926,
           20555033-20555237,20555335-20555441
          Length = 249

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -2

Query: 655 KAGLIQMFSTHRDCESTAYRSFSIKS---F*QECQKSYHRDNWLVAAK 521
           +A +++ FSTH       Y    I        +C KSYH  N+++ +K
Sbjct: 132 RAEVVEAFSTHSGANVVEYELEDISHQCLIFDDCAKSYHHYNFIMKSK 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,625,554
Number of Sequences: 37544
Number of extensions: 467269
Number of successful extensions: 1222
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)