Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0064
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 95 1e-20
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma... 30 0.28
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 29 0.86
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 27 3.5
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 8.0
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 8.0
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.0
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 25 8.0
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 94.7 bits (225), Expect = 1e-20
Identities = 43/73 (58%), Positives = 49/73 (67%)
Frame = +3
Query: 3 VIQNKRANYDTDFFMPIFKAIENATGVRPYSGKXXXXXXXXXXMAYRVLADHARTLTIAL 182
VIQNK +NYDTD F PIF I+ T RPY+GK AYRV+ADH RTLT A+
Sbjct: 255 VIQNKTSNYDTDVFSPIFAKIQELTNARPYTGKMGDEDVDGIDTAYRVVADHVRTLTFAI 314
Query: 183 SDGGCPDNTGRGY 221
SDGG P+N GRGY
Sbjct: 315 SDGGVPNNEGRGY 327
Score = 72.9 bits (171), Expect = 4e-14
Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = +2
Query: 287 FFGSLVYTVVELLGDVFPEIKKDPDSIVHVINEEEVQFLKTLLRGRNLL--YRTIEKLNN 460
FF L TVVE +GD FPE+K+ D + +++EEE F +TL RG + Y K
Sbjct: 351 FFSRLSLTVVEQMGDFFPELKRKVDDVRELLDEEEESFSRTLDRGEKMFEQYAAAAKKTP 410
Query: 461 SKTLPGDVAWRLYDTYDF 514
SKTL G+ WRLY+TY F
Sbjct: 411 SKTLQGNDVWRLYETYGF 428
Score = 39.1 bits (87), Expect = 6e-04
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +1
Query: 511 FPIDLTQLMCEEKGLNVDMEGYEKSRKESQLVSQ 612
FP+DLT LM EE G+ +D G+E ++ S+ +S+
Sbjct: 428 FPVDLTHLMAEEAGIKIDEPGFEAAQARSKEISK 461
Score = 31.1 bits (67), Expect = 0.16
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 588 KRISISFTRKNRSQEDLIALDVHAISHLQD-TGIPATDD 701
K IS ++ S +DL+ LDVHA+ L IP TDD
Sbjct: 457 KEISKQASKGGSSGDDLLVLDVHALGALSKMDDIPETDD 495
>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 30.3 bits (65), Expect = 0.28
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Frame = -1
Query: 634 SSWLR----FFLVKL---IEILFWI-FHNLPCLH*DPFLHTLIESNQ*EIVSII*TPCHV 479
SSW R FFL+ L + I F FH + P +H+L E NQ +I PCH
Sbjct: 350 SSWKRAARFFFLIGLGHALVITFLCRFHQFGVMEVMPLIHSLAEKNQ---TGLILAPCHT 406
Query: 478 T 476
T
Sbjct: 407 T 407
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 28.7 bits (61), Expect = 0.86
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +2
Query: 359 DSIVHVINEEEVQFLKTLLRGRNLLYRTIEKLNNSKTL 472
+S +H++++E + LK+ + +N+ YR N S+T+
Sbjct: 201 NSSIHLLDQETGKILKSYIGLKNMEYRVRSSFNQSETI 238
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 345 ISGKTSPSNSTTV*TKDPKNPGLAFNFS 262
I+ K + +N+TTV T++ +N L F F+
Sbjct: 771 ITSKNTTTNTTTVTTENSQNSSLEFGFT 798
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 137 RHVYSINIINPNFSRIWSHTSSVFNSFEYWHEEISIII 24
+H SI+I N S+ W SS +S + EEI ++I
Sbjct: 1401 KHSSSISI-NGVLSKAWDELSSAGSSVNLYSEEIILLI 1437
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 609 TRKNRSQEDLIALDVHAISHLQDTGIPATD 698
T +N+ ED++++ + +S Q T PAT+
Sbjct: 3124 TDENKRNEDILSIQSNFLSTNQSTNAPATN 3153
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 390 SSSFMTCTMESGSFLISGKTSPSNSTT 310
SSS T TM S + G P+NSTT
Sbjct: 132 SSSNSTSTMNSTGSVSGGSVYPTNSTT 158
>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 312
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 3 VIQNKRANYDTDFFMPIFKAIENATGVRPYSG 98
V++ NY D + A E ATG PYSG
Sbjct: 173 VVKQTGYNYKADIWSLGITAYELATGEPPYSG 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,712
Number of Sequences: 5004
Number of extensions: 56330
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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