Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0064
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0097 + 5283306-5283683,5284618-5284758,5284928-5285074,528... 76 3e-14
10_02_0098 + 5286827-5287019,5287380-5287476,5287872-5287992,528... 65 6e-11
07_01_1034 - 8962703-8962748,8962831-8962991,8963068-8963905,896... 62 3e-10
06_01_0977 + 7585817-7585970,7586057-7586146,7586500-7586702,758... 38 0.006
01_01_0095 + 733307-734060,734779-734802,735029-736098 28 6.3
>10_02_0097 +
5283306-5283683,5284618-5284758,5284928-5285074,
5285226-5285378,5285509-5285644,5285740-5285840
Length = 351
Score = 75.8 bits (178), Expect = 3e-14
Identities = 36/72 (50%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Frame = +3
Query: 3 VIQNKRANYDTDFFMPIFKAIEN--ATGVRPYSGKXXXXXXXXXXMAYRVLADHARTLTI 176
++QNK +NYDTD FMPIF AI G++ YSGK MAYRV+ADH RTL+
Sbjct: 251 ILQNKMSNYDTDVFMPIFDAIHQLAGNGIQSYSGKVGPEDVDKVDMAYRVVADHIRTLSF 310
Query: 177 ALSDGGCPDNTG 212
A++DG P G
Sbjct: 311 AIADGSQPGGMG 322
>10_02_0098 +
5286827-5287019,5287380-5287476,5287872-5287992,
5288458-5288511,5288868-5288918,5289004-5289099,
5289709-5289807,5289989-5290111,5290666-5290809,
5290902-5290973,5291053-5291128,5291208-5291350,
5291453-5291561,5291629-5291816,5292045-5292134,
5292256-5292438,5293187-5293360,5293466-5293537
Length = 694
Score = 64.9 bits (151), Expect = 6e-11
Identities = 34/84 (40%), Positives = 49/84 (58%)
Frame = +2
Query: 263 EKLNAKPGFFGSLVYTVVELLGDVFPEIKKDPDSIVHVINEEEVQFLKTLLRGRNLLYRT 442
+KL AK GFF SLV+ V+L+GDVFPE+K + I +I +EE F TL +G +
Sbjct: 86 QKLKAKQGFFSSLVHVFVQLMGDVFPELKDNEKKIKDIIKDEEESFENTLAKGFEKFKKA 145
Query: 443 IEKLNNSKTLPGDVAWRLYDTYDF 514
+ + S G A+ L+DTY +
Sbjct: 146 ADAVKES---GGTDAFVLWDTYGY 166
Score = 33.9 bits (74), Expect = 0.13
Identities = 12/30 (40%), Positives = 24/30 (80%)
Frame = +1
Query: 511 FPIDLTQLMCEEKGLNVDMEGYEKSRKESQ 600
+P+DLT++M + GL+VD EG++ + +E++
Sbjct: 166 YPVDLTEVMGVDYGLSVDREGFDAAMEEAR 195
>07_01_1034 -
8962703-8962748,8962831-8962991,8963068-8963905,
8963991-8964128,8964206-8964355,8964436-8964683,
8964825-8964953,8965735-8965960,8966909-8966975,
8967488-8967551,8968902-8969000,8969074-8969157,
8969240-8969321,8969412-8969460,8969664-8969769,
8970650-8970734,8970814-8970917,8970994-8971109,
8971187-8971373,8972005-8972113,8972633-8972761,
8973365-8973449,8973812-8973947,8974078-8974230,
8974488-8974634,8974801-8974941,8975580-8975903
Length = 1400
Score = 62.5 bits (145), Expect = 3e-10
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Frame = +3
Query: 3 VIQNKRANYDTDFFMPIFKAIENATG--VRPYSGKXXXXXXXXXXMAYRVLADHARTLTI 176
++Q K++ +DTD MP +I TG ++PYSGK +AYR++ADH RT +
Sbjct: 233 ILQKKKSKFDTDILMPTIDSIRQCTGNEIQPYSGKFGPDDINEVDLAYRIVADHIRTSSF 292
Query: 177 ALSDGGCP 200
A++DG P
Sbjct: 293 AIADGSQP 300
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 296 SLVYTVVELLGDVFPEIKKDPDSIVHVINEEEVQFLK 406
SLV +E + FPE+ + I +I EEE+ F K
Sbjct: 372 SLVSAFIESMSGDFPELLHNEKKIKDIIAEEEITFAK 408
>06_01_0977 +
7585817-7585970,7586057-7586146,7586500-7586702,
7587274-7587452,7587913-7587991,7588403-7588537,
7588651-7588800,7588887-7588997,7589084-7590004,
7590351-7590623,7590853-7591062,7591425-7591573,
7591716-7592052
Length = 996
Score = 38.3 bits (85), Expect = 0.006
Identities = 23/73 (31%), Positives = 32/73 (43%)
Frame = +3
Query: 3 VIQNKRANYDTDFFMPIFKAIENATGVRPYSGKXXXXXXXXXXMAYRVLADHARTLTIAL 182
++Q NY+TD PI IE A + S +++ DH R + +
Sbjct: 327 ILQKVPNNYETDLIFPI---IEKAASMALVS---YTTADDAMKTNLKIIGDHMRAVVYLI 380
Query: 183 SDGGCPDNTGRGY 221
SDG P N GRGY
Sbjct: 381 SDGVIPSNIGRGY 393
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 4/34 (11%)
Frame = +1
Query: 511 FPIDLTQLMCEEKGLNVDMEGY----EKSRKESQ 600
FP+++T + E+G+ VDM+G+ E RK+SQ
Sbjct: 505 FPVEITAEISGERGVIVDMKGFDMEMENQRKQSQ 538
>01_01_0095 + 733307-734060,734779-734802,735029-736098
Length = 615
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 27 YDTDFFMPI-FKAIENATGVRPYSGKXXXXXXXXXXMAYRVLADHARTLTIALSDGGCPD 203
Y+ + +P+ KA+ G+ P SG +A R+L + A T T++ S+GG PD
Sbjct: 167 YEDIYSLPLDCKAVSK--GIVPISGAVTADGPTFKQLAERIL-NFAET-TVSWSEGGIPD 222
Query: 204 N 206
N
Sbjct: 223 N 223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,218,229
Number of Sequences: 37544
Number of extensions: 319063
Number of successful extensions: 582
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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