Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0064
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52095| Best HMM Match : tRNA-synt_2c (HMM E-Value=0)               116   1e-26
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)               29   3.7  
SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8)                     28   6.4  
SB_2800| Best HMM Match : LepA_C (HMM E-Value=4.6)                     28   6.4  

>SB_52095| Best HMM Match : tRNA-synt_2c (HMM E-Value=0)
          Length = 756

 Score =  116 bits (280), Expect = 1e-26
 Identities = 54/84 (64%), Positives = 63/84 (75%)
 Frame = +2

Query: 263 EKLNAKPGFFGSLVYTVVELLGDVFPEIKKDPDSIVHVINEEEVQFLKTLLRGRNLLYRT 442
           EKLNA PGF  SLV  V++ LG+ FPE+ KDP  ++ VINEEEVQFLKTL RGR L  RT
Sbjct: 372 EKLNASPGFTASLVSVVIDTLGEFFPELNKDPQQVMDVINEEEVQFLKTLARGRRLFERT 431

Query: 443 IEKLNNSKTLPGDVAWRLYDTYDF 514
             K+ +  T+PGDVAWRLYDTY F
Sbjct: 432 ASKITDG-TIPGDVAWRLYDTYGF 454



 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 43/73 (58%), Positives = 50/73 (68%)
 Frame = +3

Query: 3   VIQNKRANYDTDFFMPIFKAIENATGVRPYSGKXXXXXXXXXXMAYRVLADHARTLTIAL 182
           +IQ K +NYDTD F P F  I  ATGV+PY G+          MAYRV+ADH RTLT+A+
Sbjct: 285 IIQGKMSNYDTDLFTPFFDKIHQATGVQPYGGQVGLADQNGIDMAYRVVADHIRTLTVAM 344

Query: 183 SDGGCPDNTGRGY 221
           SDGG PDN GRGY
Sbjct: 345 SDGGKPDNVGRGY 357



 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 21/39 (53%), Positives = 33/39 (84%)
 Frame = +1

Query: 511 FPIDLTQLMCEEKGLNVDMEGYEKSRKESQLVSQGKTAA 627
           FP+DLT+LM EE+GL VDME YE++++ +Q +++GK +A
Sbjct: 454 FPVDLTELMAEERGLRVDMEKYEEAKRRAQEIARGKDSA 492


>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3259

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +2

Query: 299  LVYTVVELLGDVFPEIKKDPDSIVHVINEEE--VQFLKTLLRGRNLLYRTIEKLNNSKTL 472
            +V  + +++ D+ P I +DP  I    NEE    Q +  +L  R+ L  T+ +  +S  L
Sbjct: 2013 MVQRIAKMMCDIMPTISEDPPEIQFGQNEETNFEQLMVNMLDERDKLMETLRETQDSLAL 2072


>SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)
          Length = 1486

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +2

Query: 356 PDSIVHVINEEEVQFLKTLLRGRNLLYRTIEKLNNSKTLPG 478
           P S+VHV  EE  +FLK    G  LL +TI + + +K   G
Sbjct: 28  PPSVVHVSREELKRFLKCKRVGNYLLGKTIGEGSFAKVKQG 68


>SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8)
          Length = 355

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 356 PDSIVHVINEEEVQFLKTLLRGRNLLYRTIEKLNNSKTLPGDVAWRLYD 502
           P  +++++  +E   +   L+  N L R + K+ N  TLP D   RLY+
Sbjct: 144 PKDMLNMMMTQERMAMAPELQVMNRLDREMSKILNDPTLPADKKIRLYN 192


>SB_2800| Best HMM Match : LepA_C (HMM E-Value=4.6)
          Length = 169

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +2

Query: 431 LYRTIEKLNNSKTLPGDVAWRLYDT 505
           L + I+K+ N+KTLP +V  RLY+T
Sbjct: 127 LDKDIQKILNNKTLPLEVKVRLYNT 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,370,315
Number of Sequences: 59808
Number of extensions: 379420
Number of successful extensions: 810
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)