Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0064
(706 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97013-4|AAB52339.1| 968|Caenorhabditis elegans Alanyl trna syn... 113 1e-25
Z66521-16|CAA91396.2| 793|Caenorhabditis elegans Hypothetical p... 56 2e-08
AF188715-1|AAF05590.1| 793|Caenorhabditis elegans alanyl-tRNA s... 56 2e-08
U41660-1|AAA84420.1| 272|Caenorhabditis elegans AlaRS A protein. 36 0.037
Z81545-5|CAB04440.1| 389|Caenorhabditis elegans Hypothetical pr... 32 0.35
Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p... 30 1.9
Z69661-3|CAA93490.1| 293|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z68011-5|CAB60293.1| 332|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z68004-10|CAB60291.1| 332|Caenorhabditis elegans Hypothetical p... 29 4.3
Z50176-1|CAA90538.2| 408|Caenorhabditis elegans Hypothetical pr... 28 5.7
>U97013-4|AAB52339.1| 968|Caenorhabditis elegans Alanyl trna
synthetase protein 2 protein.
Length = 968
Score = 113 bits (272), Expect = 1e-25
Identities = 51/87 (58%), Positives = 66/87 (75%), Gaps = 1/87 (1%)
Frame = +2
Query: 257 ASEKLNAKPGFFGSLVYTVVELLGDVFPEIKKDPDSIVHVINEEEVQFLKTLLRGRNLLY 436
ASEKLNA+PGFF SLV V+ +LG+ FPE+ +DP +++ +IN+EE QFLKTL RGR L
Sbjct: 335 ASEKLNAQPGFFASLVPVVISILGETFPELSRDPVTVMDIINDEEKQFLKTLSRGRVLFQ 394
Query: 437 RTIEKL-NNSKTLPGDVAWRLYDTYDF 514
R ++ L + T PGDV+WRLYDTY F
Sbjct: 395 RAVQSLPEGTMTFPGDVSWRLYDTYGF 421
Score = 97.5 bits (232), Expect = 8e-21
Identities = 45/73 (61%), Positives = 53/73 (72%)
Frame = +3
Query: 3 VIQNKRANYDTDFFMPIFKAIENATGVRPYSGKXXXXXXXXXXMAYRVLADHARTLTIAL 182
V+Q+K +NYDTD F PIF+AI +GVR Y+G MAYRV+ADH RTLTIAL
Sbjct: 250 VMQDKTSNYDTDIFQPIFEAIHKGSGVRAYTGFIGDEDKDGVDMAYRVVADHVRTLTIAL 309
Query: 183 SDGGCPDNTGRGY 221
SDGG PDN+GRGY
Sbjct: 310 SDGGRPDNSGRGY 322
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = +1
Query: 511 FPIDLTQLMCEEKGLNVDMEGYEKSRKESQLVSQGKT 621
FP DLTQLM EEKGL+VD +E++R+++ S T
Sbjct: 421 FPADLTQLMAEEKGLSVDNTAFEEARRKAIETSSAGT 457
Score = 35.9 bits (79), Expect = 0.028
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +3
Query: 633 DLIALDVHAISHLQDTGIPATDDS 704
D + LDVHA++ LQ G+P TDDS
Sbjct: 462 DTLDLDVHALAELQQKGVPTTDDS 485
>Z66521-16|CAA91396.2| 793|Caenorhabditis elegans Hypothetical
protein W02B12.6a protein.
Length = 793
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/73 (38%), Positives = 40/73 (54%)
Frame = +3
Query: 3 VIQNKRANYDTDFFMPIFKAIENATGVRPYSGKXXXXXXXXXXMAYRVLADHARTLTIAL 182
V+QNK +N+DTD F PI + + Y+G +R++ADH R T+A+
Sbjct: 260 VVQNKTSNFDTDVFTPILEKTSELAK-KQYTGSLDSRQDA----TFRLVADHIRAATVAI 314
Query: 183 SDGGCPDNTGRGY 221
SDG PD TG G+
Sbjct: 315 SDGAVPDGTGCGF 327
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/81 (27%), Positives = 41/81 (50%)
Frame = +2
Query: 266 KLNAKPGFFGSLVYTVVELLGDVFPEIKKDPDSIVHVINEEEVQFLKTLLRGRNLLYRTI 445
KL + LV V + +V+PEI I + N+EE QF KT+ + + ++ ++
Sbjct: 343 KLGIERYAMSELVPVVASTMKEVYPEIHDTSTHIRKIFNDEEAQFWKTVDKAKK-MFDSV 401
Query: 446 EKLNNSKTLPGDVAWRLYDTY 508
+ S + G A+ L++T+
Sbjct: 402 AAESKSPIISGRKAFNLFETH 422
>AF188715-1|AAF05590.1| 793|Caenorhabditis elegans alanyl-tRNA
synthetase protein.
Length = 793
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/73 (38%), Positives = 40/73 (54%)
Frame = +3
Query: 3 VIQNKRANYDTDFFMPIFKAIENATGVRPYSGKXXXXXXXXXXMAYRVLADHARTLTIAL 182
V+QNK +N+DTD F PI + + Y+G +R++ADH R T+A+
Sbjct: 260 VVQNKTSNFDTDVFTPILEKTSELAK-KQYTGSLDSRQDA----TFRLVADHIRAATVAI 314
Query: 183 SDGGCPDNTGRGY 221
SDG PD TG G+
Sbjct: 315 SDGAVPDGTGCGF 327
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/81 (27%), Positives = 41/81 (50%)
Frame = +2
Query: 266 KLNAKPGFFGSLVYTVVELLGDVFPEIKKDPDSIVHVINEEEVQFLKTLLRGRNLLYRTI 445
KL + LV V + +V+PEI I + N+EE QF KT+ + + ++ ++
Sbjct: 343 KLGIERYAMSELVPVVASTMKEVYPEIHDTSTHIRKIFNDEEAQFWKTVDKAKK-MFDSV 401
Query: 446 EKLNNSKTLPGDVAWRLYDTY 508
+ S + G A+ L++T+
Sbjct: 402 AAESKSPIISGRKAFNLFETH 422
>U41660-1|AAA84420.1| 272|Caenorhabditis elegans AlaRS A protein.
Length = 272
Score = 35.5 bits (78), Expect = 0.037
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +3
Query: 3 VIQNKRANYDTDFFMPIFKAI 65
V+Q+K +NYDTD F PIF+AI
Sbjct: 250 VMQDKTSNYDTDIFQPIFEAI 270
>Z81545-5|CAB04440.1| 389|Caenorhabditis elegans Hypothetical
protein F49H6.5 protein.
Length = 389
Score = 32.3 bits (70), Expect = 0.35
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +2
Query: 266 KLNAKPGFFGSLVYTVVELLGDVFPEIKKDPDSIVHVINEEEVQFLKTLLRGRNLLYRTI 445
K+ + GF V+ +EL FP++K + + H NE E+ L +GRNL R I
Sbjct: 193 KMTRRDGF--DKVWKAIELARGYFPKVKLNVVVLKHQ-NENEIVDFVNLTKGRNLDIRFI 249
Query: 446 E 448
E
Sbjct: 250 E 250
>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical
protein F21G4.2 protein.
Length = 1573
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 679 VSCR*LIACTSNAIKSSWLRFFLVKLIEILFWI 581
VSCR TS + SWL F + + E+L+WI
Sbjct: 130 VSCRNYGIVTSGGLFISWLVFTISAIPELLYWI 162
>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
protein F21G4.2 protein.
Length = 1573
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 679 VSCR*LIACTSNAIKSSWLRFFLVKLIEILFWI 581
VSCR TS + SWL F + + E+L+WI
Sbjct: 130 VSCRNYGIVTSGGLFISWLVFTISAIPELLYWI 162
>Z69661-3|CAA93490.1| 293|Caenorhabditis elegans Hypothetical
protein F48F7.5 protein.
Length = 293
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = -3
Query: 134 HVYSINIINPNFSRIWSHTSSVFNSFEYWHEEISIIISSFVLN 6
H+ N FS+ +HT ++FN+ + +E++ + +VL+
Sbjct: 109 HMRRCRRFNYQFSKFANHTGALFNNLMHSNEQLGTLFQQYVLD 151
>Z68011-5|CAB60293.1| 332|Caenorhabditis elegans Hypothetical
protein T21B6.5 protein.
Length = 332
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 116 IINPNFSRIWSHTSSVFNSFEYWHEEISIIISSFVLNY 3
IIN +F +IW+H F ++ +W I FV+NY
Sbjct: 258 IINGDFGKIWNH----FPTWSFWQLLFISGIFGFVMNY 291
>Z68004-10|CAB60291.1| 332|Caenorhabditis elegans Hypothetical
protein T21B6.5 protein.
Length = 332
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 116 IINPNFSRIWSHTSSVFNSFEYWHEEISIIISSFVLNY 3
IIN +F +IW+H F ++ +W I FV+NY
Sbjct: 258 IINGDFGKIWNH----FPTWSFWQLLFISGIFGFVMNY 291
>Z50176-1|CAA90538.2| 408|Caenorhabditis elegans Hypothetical
protein C09G1.1 protein.
Length = 408
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 261 DAFAQLFSKFYEERILYLCYQGNHHLIKQLLEF*HGQPRHDTP 133
DA +L +++ ++ Y + HHL+ L + G RH+TP
Sbjct: 2 DANRELIARYVDQYHRYPLFFFVHHLLFNLFSYLKGVIRHETP 44
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,413,804
Number of Sequences: 27780
Number of extensions: 304321
Number of successful extensions: 713
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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