Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0064
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.6  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 264 SDAFAQLFSKFYEERILY 211
           +DAF  L  K+YEE  +Y
Sbjct: 395 ADAFKDLQDKYYEEYKMY 412



 Score = 21.4 bits (43), Expect = 8.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 520 DLTQLMCEEKGLNVDMEGYEKSRKESQLVSQGKTAA 627
           DL Q  CEE+G+ + M    + R+  Q+   G   A
Sbjct: 764 DLVQKKCEERGI-LFMPIPNRYREAKQIYKVGNVQA 798


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 703 ESSVAGIPVSC 671
           +S+V GIPVSC
Sbjct: 52  DSAVKGIPVSC 62


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 703 ESSVAGIPVSC 671
           +S+V GIPVSC
Sbjct: 52  DSAVKGIPVSC 62


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 703 ESSVAGIPVSC 671
           +S+V GIPVSC
Sbjct: 52  DSAVKGIPVSC 62


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +2

Query: 347 KKDPDSIVHVINEEEVQFLKTLLRGRNLLYRTIEKLNN 460
           K D +S+VH+   ++ +    L   RNL+     + N+
Sbjct: 247 KDDYESLVHLYTRDQSETYDVLRSWRNLMDEHSNRTNS 284


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 15  KRANYDTDFFMPI 53
           K A  +TD+FMPI
Sbjct: 413 KTAEENTDYFMPI 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,371
Number of Sequences: 438
Number of extensions: 3920
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)