Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0063
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0019 + 403078-404211                                             33   0.20 
10_08_1016 - 22262760-22264331                                         31   0.81 
04_04_0232 + 23794109-23794399,23795290-23796621                       28   7.6  

>09_01_0019 + 403078-404211
          Length = 377

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +2

Query: 251 HGNGESGFDSGEGA*ETATTSKEGSRRANYPLPARGGSDEK*RYG 385
           H  G S  DSG GA ++A   K  SRR  +      GSD   R+G
Sbjct: 318 HRKGASDGDSGSGASDSADDRKRSSRRRRHRKSESSGSDGDERHG 362


>10_08_1016 - 22262760-22264331
          Length = 523

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 14/46 (30%), Positives = 30/46 (65%)
 Frame = -3

Query: 640 LIIEPAFFRTPAHRRYVRKRVSITADAVHRQRGAQMQLRAFEPQNF 503
           ++++ +F + P  RR+  KR+ +  DAV++ +G +++ RA E + F
Sbjct: 411 ILVKKSFAKRPRTRRWKLKRLPMEEDAVNKAKG-ELEKRADEYEEF 455


>04_04_0232 + 23794109-23794399,23795290-23796621
          Length = 540

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 164 DRMVKYRRRIFQMSALSTFDGSFCDYHGCHGNGESG 271
           D + + RRR  + S  ST+ G   + HG HG+G  G
Sbjct: 21  DDLARRRRRRGRCSHDSTWAGMALEAHGGHGDGVEG 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,032,435
Number of Sequences: 37544
Number of extensions: 393315
Number of successful extensions: 1085
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)