Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0063
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   8e-04
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.039
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.36 
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                29   4.4  
SB_48252| Best HMM Match : Ribosomal_60s (HMM E-Value=1.1)             28   7.7  
SB_15366| Best HMM Match : rve (HMM E-Value=0.00011)                   28   7.7  
SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)                   28   7.7  
SB_5591| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 18/20 (90%), Positives = 19/20 (95%)
 Frame = -1

Query: 312 DVVAVSQAPSPESNPDSPLP 253
           DVVAVSQAPSPESNP+SP P
Sbjct: 105 DVVAVSQAPSPESNPNSPSP 124


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -1

Query: 303 AVSQAPSPESNPDSPLP 253
           AVSQAPSPESNP+SP P
Sbjct: 52  AVSQAPSPESNPNSPSP 68


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = -2

Query: 302 PFLRLPLRNRTLIPRY 255
           PFLRLPLRNRTLI R+
Sbjct: 224 PFLRLPLRNRTLILRH 239


>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 441

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 321 PSLDVVAVSQAPSPESNPDSPLP*QP 244
           P+ DV+A  Q P P S  D PLP  P
Sbjct: 75  PAEDVMAAHQEPKPTSAIDQPLPPPP 100


>SB_48252| Best HMM Match : Ribosomal_60s (HMM E-Value=1.1)
          Length = 937

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/39 (43%), Positives = 19/39 (48%)
 Frame = -2

Query: 323 CLPWMW*PFLRLPLRNRTLIPRYRDNHGSRRNYHRKLIR 207
           C PW W P  + P   R   PR +  HG R  Y RKL R
Sbjct: 301 CYPWGWSPIGQYP---RRCAPRDK-THGKRHGY-RKLSR 334


>SB_15366| Best HMM Match : rve (HMM E-Value=0.00011)
          Length = 1178

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/39 (43%), Positives = 19/39 (48%)
 Frame = -2

Query: 323 CLPWMW*PFLRLPLRNRTLIPRYRDNHGSRRNYHRKLIR 207
           C PW W P  + P   R   PR +  HG R  Y RKL R
Sbjct: 370 CYPWGWSPIGQYP---RRCAPRDK-THGKRHGY-RKLSR 403


>SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)
          Length = 1624

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/39 (43%), Positives = 19/39 (48%)
 Frame = -2

Query: 323 CLPWMW*PFLRLPLRNRTLIPRYRDNHGSRRNYHRKLIR 207
           C PW W P  + P   R   PR +  HG R  Y RKL R
Sbjct: 683 CYPWGWSPIGQYP---RRCAPRDK-THGERHGY-RKLSR 716


>SB_5591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1038

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/39 (43%), Positives = 19/39 (48%)
 Frame = -2

Query: 323 CLPWMW*PFLRLPLRNRTLIPRYRDNHGSRRNYHRKLIR 207
           C PW W P  + P   R   PR +  HG R  Y RKL R
Sbjct: 504 CYPWGWSPIGQYP---RRCAPRDK-THGKRHGY-RKLSR 537


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,439,430
Number of Sequences: 59808
Number of extensions: 422358
Number of successful extensions: 1205
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)