Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0063
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical protein
            C52E12.4 protein.
          Length = 1487

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 643  DLIIEPAFFRTPAHRRYVRK 584
            D+  EP+F RTPAH  Y+ K
Sbjct: 1447 DMYNEPSFLRTPAHMTYLAK 1466


>U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical
           protein F41G3.10 protein.
          Length = 198

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 593 CPQTCQYHRGCGAPTARRTNAT 528
           CP+TC Y  G G  T  RT+ T
Sbjct: 133 CPRTCGYCSGSGVVTTTRTSTT 154


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 341 GNLRACCLPWMW*PFLRLPLR 279
           GNL +C  PW+W  F R  L+
Sbjct: 330 GNLNSCMNPWLWFHFNRKQLK 350


>Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical
           protein C34C6.3 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 2   SYSVTWITVVILELIHAIRTLTSDGMS 82
           SY+V+WIT       + IR + SDG++
Sbjct: 54  SYNVSWITPAASNSTYRIRLIDSDGLT 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,831,825
Number of Sequences: 27780
Number of extensions: 304317
Number of successful extensions: 845
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)