Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0062
         (708 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D563A7 Cluster: PREDICTED: similar to CG17540-PA...    61   3e-08
UniRef50_Q7PVF2 Cluster: ENSANGP00000010643; n=2; Culicidae|Rep:...    40   0.045
UniRef50_Q7PL83 Cluster: CG17540-PA, isoform A; n=7; Endopterygo...    39   0.14 
UniRef50_Q5W010 Cluster: RNA binding motif protein 17; n=5; Euar...    39   0.14 
UniRef50_Q96I25 Cluster: Splicing factor 45; n=39; Euteleostomi|...    39   0.14 
UniRef50_Q4UI46 Cluster: RNA binding protein, putative; n=2; The...    38   0.32 
UniRef50_Q55BL6 Cluster: Putative uncharacterized protein; n=1; ...    36   0.98 
UniRef50_Q4H3W4 Cluster: Transcription factor protein; n=1; Cion...    33   5.2  
UniRef50_A7S8H1 Cluster: Predicted protein; n=2; Nematostella ve...    33   5.2  
UniRef50_A7ARV1 Cluster: Putative uncharacterized protein; n=1; ...    33   5.2  

>UniRef50_UPI0000D563A7 Cluster: PREDICTED: similar to CG17540-PA.3;
           n=3; Endopterygota|Rep: PREDICTED: similar to
           CG17540-PA.3 - Tribolium castaneum
          Length = 387

 Score = 60.9 bits (141), Expect = 3e-08
 Identities = 34/60 (56%), Positives = 38/60 (63%)
 Frame = +2

Query: 47  MSLYDDLDTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 226
           MSLYDDLD +K R TEKV+ WSSGI           A VTQPKRE  R+ +  L PVIDL
Sbjct: 1   MSLYDDLD-VKARATEKVSGWSSGIKLLQSQLQLKKATVTQPKREQQRKVS--LAPVIDL 57



 Score = 51.2 bits (117), Expect = 2e-05
 Identities = 17/29 (58%), Positives = 25/29 (86%)
 Frame = +1

Query: 313 DFDWNVANEYDPMWPNDYEKVAKELQAKR 399
           ++DWNV +EYDP+WPN+++KV KEL+  R
Sbjct: 91  EYDWNVDDEYDPLWPNEFDKVVKELRENR 119



 Score = 36.7 bits (81), Expect = 0.56
 Identities = 28/65 (43%), Positives = 31/65 (47%)
 Frame = +3

Query: 513 EAEEISKRATGVAIAXXXXXXXXXXXXXXXXALPQATASAGFSIGGYGASSVAAKIMAKY 692
           E  +   RA+GVAIA                  P  T +A F       SSVAAKIMAKY
Sbjct: 173 EPVQAKPRASGVAIAPPPSLQEPAESAPIFPNKPP-TPAANFG------SSVAAKIMAKY 225

Query: 693 GFKEG 707
           GFKEG
Sbjct: 226 GFKEG 230


>UniRef50_Q7PVF2 Cluster: ENSANGP00000010643; n=2; Culicidae|Rep:
           ENSANGP00000010643 - Anopheles gambiae str. PEST
          Length = 244

 Score = 40.3 bits (90), Expect = 0.045
 Identities = 17/22 (77%), Positives = 19/22 (86%)
 Frame = +3

Query: 642 IGGYGASSVAAKIMAKYGFKEG 707
           +  YG SSVAAKIMAKYGFK+G
Sbjct: 50  LAAYGGSSVAAKIMAKYGFKDG 71


>UniRef50_Q7PL83 Cluster: CG17540-PA, isoform A; n=7;
           Endopterygota|Rep: CG17540-PA, isoform A - Drosophila
           melanogaster (Fruit fly)
          Length = 403

 Score = 38.7 bits (86), Expect = 0.14
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +3

Query: 651 YGASSVAAKIMAKYGFKEG 707
           Y ASSVAAKIMAKYGFK+G
Sbjct: 206 YSASSVAAKIMAKYGFKDG 224



 Score = 37.5 bits (83), Expect = 0.32
 Identities = 13/22 (59%), Positives = 19/22 (86%)
 Frame = +1

Query: 319 DWNVANEYDPMWPNDYEKVAKE 384
           DW+VA+EYDP  PN+YEK+ ++
Sbjct: 88  DWDVADEYDPQRPNEYEKLKEK 109


>UniRef50_Q5W010 Cluster: RNA binding motif protein 17; n=5;
           Euarchontoglires|Rep: RNA binding motif protein 17 -
           Homo sapiens (Human)
          Length = 221

 Score = 38.7 bits (86), Expect = 0.14
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = +1

Query: 328 VANEYDPMWPNDYEKVAKELQAKR 399
           +A+EYDPM+PNDYEKV K  + +R
Sbjct: 96  LADEYDPMFPNDYEKVVKRQREER 119


>UniRef50_Q96I25 Cluster: Splicing factor 45; n=39;
           Euteleostomi|Rep: Splicing factor 45 - Homo sapiens
           (Human)
          Length = 401

 Score = 38.7 bits (86), Expect = 0.14
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = +1

Query: 328 VANEYDPMWPNDYEKVAKELQAKR 399
           +A+EYDPM+PNDYEKV K  + +R
Sbjct: 96  LADEYDPMFPNDYEKVVKRQREER 119


>UniRef50_Q4UI46 Cluster: RNA binding protein, putative; n=2;
           Theileria|Rep: RNA binding protein, putative - Theileria
           annulata
          Length = 338

 Score = 37.5 bits (83), Expect = 0.32
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 283 KTITASLNV-RDFDWNVANEYDPMWPNDYEKVAKELQAK 396
           KT T    V  + ++N  +EYDP +PN+YEKV K L  K
Sbjct: 48  KTNTVGYRVGNNVNYNFNDEYDPRYPNEYEKVTKLLSIK 86


>UniRef50_Q55BL6 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 372

 Score = 35.9 bits (79), Expect = 0.98
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 277 QPKTITASLNVRDF---DWNVANEYDPMWPNDYEKVAKE 384
           Q +T    +   DF   D  + NEYDP  PNDY+K+ KE
Sbjct: 164 QQQTSITDILFNDFQEEDDKILNEYDPFIPNDYDKILKE 202


>UniRef50_Q4H3W4 Cluster: Transcription factor protein; n=1; Ciona
           intestinalis|Rep: Transcription factor protein - Ciona
           intestinalis (Transparent sea squirt)
          Length = 549

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +1

Query: 286 TITASLNVRDFDWNVANEYDPMWPNDYEKVAKEL 387
           T+TA LN    DWN    YD + P+D EKV ++L
Sbjct: 121 TVTAVLNQAHSDWNNHLLYDLVHPDDVEKVKEQL 154


>UniRef50_A7S8H1 Cluster: Predicted protein; n=2; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 396

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +1

Query: 328 VANEYDPMWPNDYEKVAKELQAKR 399
           + +EYDP+ PNDYE V ++++ KR
Sbjct: 103 IEDEYDPLKPNDYEVVKEKIREKR 126


>UniRef50_A7ARV1 Cluster: Putative uncharacterized protein; n=1;
           Babesia bovis|Rep: Putative uncharacterized protein -
           Babesia bovis
          Length = 265

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 310 RDFDWNVANEYDPMWPNDYEKVAKE 384
           + + +N  + YDPM+PNDYE +++E
Sbjct: 30  QQYSYNPNDVYDPMYPNDYEHLSRE 54


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 589,609,354
Number of Sequences: 1657284
Number of extensions: 9282233
Number of successful extensions: 23324
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 22499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23299
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)