Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0062
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0570 + 23347957-23348940,23349038-23349181,23349666-23350046     31   1.2  
08_01_0473 - 4169754-4169938,4170039-4170121,4170297-4170347,417...    30   1.6  
01_05_0166 + 18844468-18845184,18847394-18847690                       28   8.4  

>01_05_0570 + 23347957-23348940,23349038-23349181,23349666-23350046
          Length = 502

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 649 PPMENPADAVACGRALIGGGDEDSVVREGGG 557
           P M +PA    C  A  GGGD+D    EG G
Sbjct: 13  PGMRSPASPGGCLSAAFGGGDDDGEEGEGEG 43


>08_01_0473 -
           4169754-4169938,4170039-4170121,4170297-4170347,
           4170434-4170507,4170585-4170679,4171672-4171754,
           4171848-4172104
          Length = 275

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 673 AATELAP*PPMENPADAVACGRALIGGGDEDSVVREGGG 557
           AA++ AP PP E      A G   I   DE   V +GGG
Sbjct: 7   AASDPAPPPPPETEEQPAAAGGEEIAALDEQLAVADGGG 45


>01_05_0166 + 18844468-18845184,18847394-18847690
          Length = 337

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 328 VANEYDPMWPNDYEKVAKE 384
           V  EYDP  PNDYE   K+
Sbjct: 61  VMEEYDPARPNDYEDYRKD 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,255,365
Number of Sequences: 37544
Number of extensions: 271396
Number of successful extensions: 853
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)