Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0062
         (708 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ295864-1|ABB99954.1|  403|Drosophila melanogaster RNA binding ...    39   0.008
BT012503-1|AAS93774.1|  363|Drosophila melanogaster AT25717p pro...    39   0.008
BT012461-1|AAS93732.1|  371|Drosophila melanogaster RE44883p pro...    39   0.008
AY071532-1|AAL49154.1|  379|Drosophila melanogaster RE57542p pro...    39   0.008
AE014134-3634|EAA46009.2|  363|Drosophila melanogaster CG17540-P...    39   0.008
AE014134-3633|EAA46010.2|  371|Drosophila melanogaster CG17540-P...    39   0.008
AE014134-3632|EAA46008.1|  403|Drosophila melanogaster CG17540-P...    39   0.008
AY069581-1|AAL39726.1|  642|Drosophila melanogaster LD32037p pro...    29   4.7  
AF154417-1|AAD38396.1|  644|Drosophila melanogaster hypoxia-indu...    29   4.7  
AF020426-1|AAB88882.1|  644|Drosophila melanogaster basic helix-...    29   4.7  
AF016053-1|AAB69695.1|  631|Drosophila melanogaster aryl hydroca...    29   4.7  
AE014297-861|AAF54329.1|  642|Drosophila melanogaster CG11987-PA...    29   4.7  
AB002556-1|BAA22868.1|  642|Drosophila melanogaster bHLH-PAS tra...    29   4.7  
Y14157-1|CAA74574.1| 2176|Drosophila melanogaster Toucan protein...    29   8.2  

>DQ295864-1|ABB99954.1|  403|Drosophila melanogaster RNA binding
           motif protein 17 protein.
          Length = 403

 Score = 38.7 bits (86), Expect = 0.008
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +3

Query: 651 YGASSVAAKIMAKYGFKEG 707
           Y ASSVAAKIMAKYGFK+G
Sbjct: 206 YSASSVAAKIMAKYGFKDG 224



 Score = 37.5 bits (83), Expect = 0.018
 Identities = 13/22 (59%), Positives = 19/22 (86%)
 Frame = +1

Query: 319 DWNVANEYDPMWPNDYEKVAKE 384
           DW+VA+EYDP  PN+YEK+ ++
Sbjct: 88  DWDVADEYDPQRPNEYEKLKEK 109


>BT012503-1|AAS93774.1|  363|Drosophila melanogaster AT25717p
           protein.
          Length = 363

 Score = 38.7 bits (86), Expect = 0.008
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +3

Query: 651 YGASSVAAKIMAKYGFKEG 707
           Y ASSVAAKIMAKYGFK+G
Sbjct: 166 YSASSVAAKIMAKYGFKDG 184



 Score = 37.5 bits (83), Expect = 0.018
 Identities = 13/22 (59%), Positives = 19/22 (86%)
 Frame = +1

Query: 319 DWNVANEYDPMWPNDYEKVAKE 384
           DW+VA+EYDP  PN+YEK+ ++
Sbjct: 48  DWDVADEYDPQRPNEYEKLKEK 69


>BT012461-1|AAS93732.1|  371|Drosophila melanogaster RE44883p
           protein.
          Length = 371

 Score = 38.7 bits (86), Expect = 0.008
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +3

Query: 651 YGASSVAAKIMAKYGFKEG 707
           Y ASSVAAKIMAKYGFK+G
Sbjct: 174 YSASSVAAKIMAKYGFKDG 192



 Score = 37.5 bits (83), Expect = 0.018
 Identities = 13/22 (59%), Positives = 19/22 (86%)
 Frame = +1

Query: 319 DWNVANEYDPMWPNDYEKVAKE 384
           DW+VA+EYDP  PN+YEK+ ++
Sbjct: 56  DWDVADEYDPQRPNEYEKLKEK 77


>AY071532-1|AAL49154.1|  379|Drosophila melanogaster RE57542p
           protein.
          Length = 379

 Score = 38.7 bits (86), Expect = 0.008
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +3

Query: 651 YGASSVAAKIMAKYGFKEG 707
           Y ASSVAAKIMAKYGFK+G
Sbjct: 182 YSASSVAAKIMAKYGFKDG 200



 Score = 37.5 bits (83), Expect = 0.018
 Identities = 13/22 (59%), Positives = 19/22 (86%)
 Frame = +1

Query: 319 DWNVANEYDPMWPNDYEKVAKE 384
           DW+VA+EYDP  PN+YEK+ ++
Sbjct: 64  DWDVADEYDPQRPNEYEKLKEK 85


>AE014134-3634|EAA46009.2|  363|Drosophila melanogaster CG17540-PC,
           isoform C protein.
          Length = 363

 Score = 38.7 bits (86), Expect = 0.008
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +3

Query: 651 YGASSVAAKIMAKYGFKEG 707
           Y ASSVAAKIMAKYGFK+G
Sbjct: 166 YSASSVAAKIMAKYGFKDG 184



 Score = 37.5 bits (83), Expect = 0.018
 Identities = 13/22 (59%), Positives = 19/22 (86%)
 Frame = +1

Query: 319 DWNVANEYDPMWPNDYEKVAKE 384
           DW+VA+EYDP  PN+YEK+ ++
Sbjct: 48  DWDVADEYDPQRPNEYEKLKEK 69


>AE014134-3633|EAA46010.2|  371|Drosophila melanogaster CG17540-PB,
           isoform B protein.
          Length = 371

 Score = 38.7 bits (86), Expect = 0.008
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +3

Query: 651 YGASSVAAKIMAKYGFKEG 707
           Y ASSVAAKIMAKYGFK+G
Sbjct: 174 YSASSVAAKIMAKYGFKDG 192



 Score = 37.5 bits (83), Expect = 0.018
 Identities = 13/22 (59%), Positives = 19/22 (86%)
 Frame = +1

Query: 319 DWNVANEYDPMWPNDYEKVAKE 384
           DW+VA+EYDP  PN+YEK+ ++
Sbjct: 56  DWDVADEYDPQRPNEYEKLKEK 77


>AE014134-3632|EAA46008.1|  403|Drosophila melanogaster CG17540-PA,
           isoform A protein.
          Length = 403

 Score = 38.7 bits (86), Expect = 0.008
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +3

Query: 651 YGASSVAAKIMAKYGFKEG 707
           Y ASSVAAKIMAKYGFK+G
Sbjct: 206 YSASSVAAKIMAKYGFKDG 224



 Score = 37.5 bits (83), Expect = 0.018
 Identities = 13/22 (59%), Positives = 19/22 (86%)
 Frame = +1

Query: 319 DWNVANEYDPMWPNDYEKVAKE 384
           DW+VA+EYDP  PN+YEK+ ++
Sbjct: 88  DWDVADEYDPQRPNEYEKLKEK 109


>AY069581-1|AAL39726.1|  642|Drosophila melanogaster LD32037p
           protein.
          Length = 642

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 286 TITASLNVRDFDWNVANEYDPMWPNDYEKVAKELQAKRLQ 405
           ++T  LN    DW   + Y+ + P+D EK+ ++L  +  Q
Sbjct: 116 SVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLSTQESQ 155


>AF154417-1|AAD38396.1|  644|Drosophila melanogaster
           hypoxia-inducible factor 1b protein.
          Length = 644

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 286 TITASLNVRDFDWNVANEYDPMWPNDYEKVAKELQAKRLQ 405
           ++T  LN    DW   + Y+ + P+D EK+ ++L  +  Q
Sbjct: 116 SVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLSTQESQ 155


>AF020426-1|AAB88882.1|  644|Drosophila melanogaster basic
           helix-loop-helix PAS protein protein.
          Length = 644

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 286 TITASLNVRDFDWNVANEYDPMWPNDYEKVAKELQAKRLQ 405
           ++T  LN    DW   + Y+ + P+D EK+ ++L  +  Q
Sbjct: 116 SVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLSTQESQ 155


>AF016053-1|AAB69695.1|  631|Drosophila melanogaster aryl
           hydrocarbon receptor nucleartranslocator-like protein
           protein.
          Length = 631

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 286 TITASLNVRDFDWNVANEYDPMWPNDYEKVAKELQAKRLQ 405
           ++T  LN    DW   + Y+ + P+D EK+ ++L  +  Q
Sbjct: 116 SVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLSTQESQ 155


>AE014297-861|AAF54329.1|  642|Drosophila melanogaster CG11987-PA
           protein.
          Length = 642

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 286 TITASLNVRDFDWNVANEYDPMWPNDYEKVAKELQAKRLQ 405
           ++T  LN    DW   + Y+ + P+D EK+ ++L  +  Q
Sbjct: 116 SVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLSTQESQ 155


>AB002556-1|BAA22868.1|  642|Drosophila melanogaster bHLH-PAS
           transcription factor protein.
          Length = 642

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 286 TITASLNVRDFDWNVANEYDPMWPNDYEKVAKELQAKRLQ 405
           ++T  LN    DW   + Y+ + P+D EK+ ++L  +  Q
Sbjct: 116 SVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLSTQESQ 155


>Y14157-1|CAA74574.1| 2176|Drosophila melanogaster Toucan protein
            protein.
          Length = 2176

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 649  PPMENPADAVACGRALIGGGDEDSVVREGGGAIA 548
            PP   P D  + G   +GGG  +SV   GGGA A
Sbjct: 1166 PPTRQPLDKGSVGAGSVGGGGAESV--GGGGARA 1197


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,135,912
Number of Sequences: 53049
Number of extensions: 476035
Number of successful extensions: 1451
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3128965752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)