Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0062
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.6  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.6  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.6  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   8.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   8.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -3

Query: 655 P*PPMENPADAVACGRALIGGGDEDSVVREGGG 557
           P P M  P  AVA       G     VV  GGG
Sbjct: 555 PKPRMSGPVAAVAAAAVAAAGVGGVPVVGAGGG 587


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -3

Query: 436 SYPTCLLCHLTEASLLAILLQLFHN 362
           SY  C++  +  + +L +L+ +FH+
Sbjct: 259 SYFNCIMFMVASSVVLTVLVLIFHH 283


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -3

Query: 436 SYPTCLLCHLTEASLLAILLQLFHN 362
           SY  C++  +  + +L +L+ +FH+
Sbjct: 259 SYFNCIMFMVASSVVLTVLVLIFHH 283


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -3

Query: 436 SYPTCLLCHLTEASLLAILLQLFHN 362
           SY  C++  +  + +L +L+ +FH+
Sbjct: 259 SYFNCIMFMVASSVVLTVLVLIFHH 283


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -3

Query: 436 SYPTCLLCHLTEASLLAILLQLFHN 362
           SY  C++  +  + +L +L+ +FH+
Sbjct: 259 SYFNCIMFMVASSVVLTVLVLIFHH 283


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -3

Query: 436 SYPTCLLCHLTEASLLAILLQLFHN 362
           SY  C++  +  + +L +L+ +FH+
Sbjct: 259 SYFNCIMFMVASSVVLTVLVLIFHH 283


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -3

Query: 436 SYPTCLLCHLTEASLLAILLQLFHN 362
           SY  C++  +  + +L +L+ +FH+
Sbjct: 259 SYFNCIMFMVASSVVLTVLVLIFHH 283


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 304 NVRDFDWNVANEYDPMWPNDYEKVAK 381
           N  +++ N  N Y+  + N+Y+K+ K
Sbjct: 93  NYNNYNNNYNNNYNNNYNNNYKKLYK 118


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 304 NVRDFDWNVANEYDPMWPNDYEKVAK 381
           N  +++ N  N Y+  + N+Y+K+ K
Sbjct: 93  NYNNYNNNYNNNYNNNYNNNYKKLYK 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,298
Number of Sequences: 438
Number of extensions: 2386
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)