Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0061
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    29   0.22 
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   8.2  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    24   8.2  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    24   8.2  

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 29.5 bits (63), Expect = 0.22
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 213  SYIQHGKYFQGLYRFMLVHLVSIYYYF 293
            S +  G  F+ +Y   L HL+SIYY+F
Sbjct: 1388 SILLEGDIFKSMYVLSLDHLLSIYYWF 1414


>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 206

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 103 KFKEGGAAMFEDNNKNHHNLIEGIKFI 23
           +FK  G    EDNN+  +  +E +K +
Sbjct: 39  RFKNAGEYFDEDNNEEEYPSLESLKTV 65


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 94  EGGAAMFEDNNKNHHN 47
           EGG A+   N+++HHN
Sbjct: 658 EGGEAVVNGNSQHHHN 673


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 326 LKLSYLKEINAKIIINTHEMNQ 261
           LKL+  +EIN  II  THE+ Q
Sbjct: 70  LKLAENQEINLSIIDCTHEIEQ 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,134,577
Number of Sequences: 5004
Number of extensions: 17080
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)