Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0061
         (416 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024839-8|AAF60825.1|  383|Caenorhabditis elegans Hypothetical ...    27   7.2  
AC024839-7|AAF60827.1|  383|Caenorhabditis elegans Hypothetical ...    27   7.2  
Z68001-2|CAA91973.2|  130|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>AC024839-8|AAF60825.1|  383|Caenorhabditis elegans Hypothetical
           protein Y59E9AR.8 protein.
          Length = 383

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 270 DEPT*IYINLENIYHVEYK-NISINYNQH 187
           DEP  I++NL+N+   E K   S+ Y+QH
Sbjct: 9   DEPFRIHLNLDNLTEDEAKARFSLIYDQH 37


>AC024839-7|AAF60827.1|  383|Caenorhabditis elegans Hypothetical
           protein Y59E9AR.2 protein.
          Length = 383

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 270 DEPT*IYINLENIYHVEYK-NISINYNQH 187
           DEP  I++NL+N+   E K   S+ Y+QH
Sbjct: 9   DEPFRIHLNLDNLTEDEAKARFSLIYDQH 37


>Z68001-2|CAA91973.2|  130|Caenorhabditis elegans Hypothetical
           protein C11G10.1 protein.
          Length = 130

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 183 FSAGYSLYLYSYIQHGKY 236
           FSAG +L + SY+ HG Y
Sbjct: 26  FSAGLTLLIASYMYHGSY 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,957,446
Number of Sequences: 27780
Number of extensions: 88268
Number of successful extensions: 216
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)