Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0061
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   1.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   1.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   2.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   3.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   3.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   4.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   5.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   9.7  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
 Frame = -3

Query: 324 KIIIFKGNQCK--NNNKYSRDEPT*IYINLENIYHVEYKNISINYNQ 190
           KII    N  K  N N Y+ +       N  N Y   YKN  IN  Q
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQ 126


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
 Frame = -3

Query: 324 KIIIFKGNQCK--NNNKYSRDEPT*IYINLENIYHVEYKNISINYNQ 190
           KII    N  K  N N Y+ +       N  N Y   YKN  IN  Q
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQ 126


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -3

Query: 324 KIIIFKGNQCKNNNKYSRDEPT*IYINLENIYHVEYKNISINYN 193
           KII    N  K +N  + +     Y N  N Y+  YK +  N N
Sbjct: 313 KIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNIN 356


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 207 LYSYIQHGKYFQGLYRFMLVHLVSIYYY 290
           LY Y Q   Y+  L  ++ +    +YY+
Sbjct: 292 LYVYAQESDYYPDLNEWLYILSGCLYYF 319


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -3

Query: 324 KIIIFKGNQC-KNNNKYSRDEPT*IYINLENIYHVEYKNISIN 199
           KII    N+   NNN Y+ +     Y N  N  +  YK +  N
Sbjct: 313 KIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNNYKKLYYN 355


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 69  SSNIAAPPSLNLLGEISL 122
           S  ++ PP+LNL+ +I L
Sbjct: 28  SPTLSTPPTLNLMEQILL 45


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 382 CFVFVVIFYLKSNRNKIN 329
           C +FVVIF+    R + N
Sbjct: 288 CSLFVVIFHFAHPREEFN 305


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 252 YINLENIYHVEYKNISI 202
           Y NL   YH +Y N  I
Sbjct: 718 YANLYTKYHGQYPNTQI 734


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,141
Number of Sequences: 438
Number of extensions: 1476
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)