Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0060
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z66513-3|CAA91331.1|  186|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical
           protein T11B7.4d protein.
          Length = 1424

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/66 (30%), Positives = 27/66 (40%)
 Frame = +1

Query: 97  DPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRQIPRMVAS 276
           +  GL R   + + ET  +K H    P S   +V      + R A A   F Q PR+   
Sbjct: 789 ESRGLHRHEEKAQIETSTIKIH---EPSSPPPSVHKFGAVNTRAAPAPVQFMQTPRIAVK 845

Query: 277 HHRPLG 294
            H P G
Sbjct: 846 IHEPTG 851


>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
           protein T11B7.4d protein.
          Length = 1424

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/66 (30%), Positives = 27/66 (40%)
 Frame = +1

Query: 97  DPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRQIPRMVAS 276
           +  GL R   + + ET  +K H    P S   +V      + R A A   F Q PR+   
Sbjct: 789 ESRGLHRHEEKAQIETSTIKIH---EPSSPPPSVHKFGAVNTRAAPAPVQFMQTPRIAVK 845

Query: 277 HHRPLG 294
            H P G
Sbjct: 846 IHEPTG 851


>Z66513-3|CAA91331.1|  186|Caenorhabditis elegans Hypothetical
           protein F54D5.4 protein.
          Length = 186

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 142 TRL-VKSHCLEPPDSRGSTVSISLPD-SARLASALEAFRQIPRMVASHHRPLGRVHEPNV 315
           TRL  K +C E   + G+ +     D S    + +E  R+I  ++A H     R  +PN 
Sbjct: 44  TRLNTKYYCFEGCLNTGTALQNCKVDMSGNNGTRIERSREIKEVIALHQLARQRDEDPNA 103

Query: 316 RNC 324
           ++C
Sbjct: 104 KSC 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,611,881
Number of Sequences: 27780
Number of extensions: 391064
Number of successful extensions: 1019
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)