Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0060
         (786 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   4.6  
At5g18000.1 68418.m02111 transcriptional factor B3 family protei...    28   6.1  
At3g44730.1 68416.m04814 kinesin motor protein-related similar t...    28   8.1  
At1g77310.1 68414.m09004 wound-responsive protein, putative simi...    28   8.1  
At1g67970.1 68414.m07764 heat shock factor protein, putative (HS...    28   8.1  
At1g14740.1 68414.m01762 expressed protein                             28   8.1  

>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 661 RAKAGLIQMFSTHRDCESTAYRSFSIK 581
           RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 291 RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At5g18000.1 68418.m02111 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 307

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 465 RNDRKSRHRRIKKQRAMNAWLPQASYPC 548
           R +RKS ++ +KK+  + +W  ++S+PC
Sbjct: 135 REERKSIYKDVKKEEEIESW-SESSHPC 161


>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
           other kinesin-like proteins of A. thaliana: F02P16.12
           (PID:g2191180), katA (D11371), katB (D21137), and katC
           (D21138); contains non-consensus AT-AC splice sites at
           intron 10
          Length = 1087

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +1

Query: 307 PNVRNCGSSRTEQYYYRNDKPSVG*N*PVSRRSNPAHVP 423
           P+ R+  + R      RN KP V  N PVSR   PA VP
Sbjct: 829 PSRRSLSTDRASTIKSRN-KPDVTQNLPVSRTPFPARVP 866


>At1g77310.1 68414.m09004 wound-responsive protein, putative similar
           to wound-responsive protein 14.05 (GI:16506638)
           [Castanea sativa]
          Length = 699

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +2

Query: 590 KGSIGRAFAVPMRTEHLDQASFCPFAPREVSVLAELALG--HLRYSLTDVPPQSNSPPGR 763
           K   G    V    +H D+A+  P         A  + G  H + S   V  QSNSPPG+
Sbjct: 240 KAQNGNDSLVLENVKHTDKANHQPMNATSPKSKAAGSSGPLHPKCSSKSVHEQSNSPPGK 299

Query: 764 SSNRIT 781
           S   ++
Sbjct: 300 SRPNVS 305


>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
           / heat shock transcription factor, putative (HSTF5)
           identical to heat shock transcription factor 5 (HSF5)
           SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 374

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 287 GRWCEATIRGICLNASKAEASLAESGKDMLTVEPRESGGSKQCD 156
           G W +  +       +K + ++ + GKD LT+E  E  G+ + D
Sbjct: 286 GAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329


>At1g14740.1 68414.m01762 expressed protein
          Length = 733

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = -2

Query: 347 YCSVREEPQFRTFGSCTRP-SGRWCEATIRGICLNASKAEASLAESGKDMLTVEPRESGG 171
           + +VR       F S + P SG   E T+  +C N+ K   SL + GK+++T     S  
Sbjct: 46  FLNVRSNNLDGGFSSKSSPRSGN--ELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYD 103

Query: 170 SK--QCDFTSRVSHSKRETRRRS 108
            K  + DF +    +   ++R++
Sbjct: 104 DKWVERDFFNLREMNPNSSKRKA 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,822,614
Number of Sequences: 28952
Number of extensions: 377637
Number of successful extensions: 1037
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)