Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0059
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    28   1.0  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    27   2.3  
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    27   3.1  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   9.5  
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po...    25   9.5  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    25   9.5  

>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +1

Query: 448 CCKHLFIVNIND*SLHVFF*ILTTKFFLHTFMYCSVFSFLSVVYSMISVL 597
           C   +F++  +   L  FF  + +KF +++  +C +FSF   VYS++ ++
Sbjct: 25  CLLIMFLILYSQEILSFFF--MCSKFSMNSLKFCVLFSF-KTVYSLLKLI 71


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 54  LITTDRWLRKQLTLDTIINDKSNLLENWHRLFTSILTYVNS 176
           +I T   +R  L+  T I   SNL+E W  +  SI  Y+NS
Sbjct: 280 IIWTSSLIRAALSKGTPI---SNLMEQWEFMQLSIAMYINS 317


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = -1

Query: 348 SKIKSKRL*PNAGYIVNCE*RAYVLGVPSPLLEVKAGSGLXXXXXXKLNRTTALSNTN 175
           +K+  K+  PN+GYI +      +L    P    K  S        + N  T L+NTN
Sbjct: 162 NKLSPKKTSPNSGYITSPLRHPILLSETEPGTPTKNDSPAYIGLPSQPNSITTLNNTN 219


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 187 VKHELLTYVKIEVNNLCQFSNKFD 116
           V H++L YV   +NN  Q++ K++
Sbjct: 504 VNHKILKYVIGAINNAIQYAQKYN 527


>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 507 NINNKVFPPHFYVLFGFFFPV 569
           N N+ +FP  + +  G FFPV
Sbjct: 300 NDNDDIFPGTYEIKIGLFFPV 320


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = +3

Query: 534 HFYVLFGFFFP--VSCIFYDFSVDCIFCNISNNV 629
           H Y+  G+     VSC  Y F+V C    + N +
Sbjct: 379 HHYIQLGYQLADTVSCAAYSFAVSCALLFVMNYI 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,841
Number of Sequences: 5004
Number of extensions: 44696
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)