Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0059
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3618| Best HMM Match : C2 (HMM E-Value=4.8e-23)                     29   4.3  
SB_5057| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_58506| Best HMM Match : Vps52 (HMM E-Value=0.099)                   28   7.6  

>SB_3618| Best HMM Match : C2 (HMM E-Value=4.8e-23)
          Length = 486

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 84  QLTLDTIINDKSNLLENWHRLFTSILTYV 170
           Q+T+D   ND S +   W+RL   + TY+
Sbjct: 116 QVTIDLSKNDFSKVYTTWYRLLPMVSTYI 144


>SB_5057| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 487 SLHVFF*ILTTKFFLHTFMYCSVFSFLSVVYSMISVL 597
           SL V + I  T+FFL  F+Y +    +SVV  ++S L
Sbjct: 148 SLSVPWLIYLTQFFLFAFVYVNTAILMSVVMILVSFL 184


>SB_58506| Best HMM Match : Vps52 (HMM E-Value=0.099)
          Length = 775

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 232 TKRKMKKKVESHNRAVKHELLTYVKIEVNNLCQFSNKFD 116
           T  K +K+++   R V   L + +++E+N   QF++K D
Sbjct: 358 TDVKERKQLDEEVRKVMQGLFSVLEVELNAFIQFADKLD 396


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,769,124
Number of Sequences: 59808
Number of extensions: 303888
Number of successful extensions: 575
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)