Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0059
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92782-11|CAE17813.1|  382|Caenorhabditis elegans Hypothetical p...    28   5.0  
AF016446-5|AAC24163.1|  329|Caenorhabditis elegans Serpentine re...    28   5.0  
U58754-4|AAX22292.1|  332|Caenorhabditis elegans Serpentine rece...    28   6.6  
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot...    27   8.7  

>Z92782-11|CAE17813.1|  382|Caenorhabditis elegans Hypothetical
           protein F14F8.11 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +1

Query: 550 SVFSFLSVVYSMISVLIAYFVT 615
           SVFSFLSVV   I  LI YF++
Sbjct: 322 SVFSFLSVVNGTIHFLIFYFMS 343


>AF016446-5|AAC24163.1|  329|Caenorhabditis elegans Serpentine
           receptor, class h protein22 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 511 LTTKFFLHTFMYCSVFSFLSVVYSMISVLIAYFVTYQIML 630
           L  + F H+  + S+ ++   ++S++S+    FVTY+  L
Sbjct: 9   LIFRIFTHSIHFVSLPTYFLALFSLVSIKSKVFVTYRYFL 48


>U58754-4|AAX22292.1|  332|Caenorhabditis elegans Serpentine
           receptor, class sx protein15 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 496 VFF*ILTTKFFLHTFMYCSVFSFLSVVYSMISVLIAY 606
           + F I + +F+  T  Y S+  FL V+Y +ISV+  +
Sbjct: 115 ILFPIKSRRFYTPT--YLSILFFLPVIYGVISVIFGF 149


>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical
           protein T06E4.3b protein.
          Length = 2514

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 69  RWLRKQLTLDTIINDKSNLLENWHRLFTSILTYVNSSCLTARLC 200
           +WL   L L    NDK  LLEN+  L   + T  +     ARLC
Sbjct: 293 QWLIIYLELIDDANDKFGLLENFSLLLLDLSTNHDIHEFPARLC 336


>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical
           protein T06E4.3a protein.
          Length = 2531

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 69  RWLRKQLTLDTIINDKSNLLENWHRLFTSILTYVNSSCLTARLC 200
           +WL   L L    NDK  LLEN+  L   + T  +     ARLC
Sbjct: 293 QWLIIYLELIDDANDKFGLLENFSLLLLDLSTNHDIHEFPARLC 336


>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
           protein.
          Length = 2514

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 69  RWLRKQLTLDTIINDKSNLLENWHRLFTSILTYVNSSCLTARLC 200
           +WL   L L    NDK  LLEN+  L   + T  +     ARLC
Sbjct: 293 QWLIIYLELIDDANDKFGLLENFSLLLLDLSTNHDIHEFPARLC 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,094,626
Number of Sequences: 27780
Number of extensions: 252288
Number of successful extensions: 580
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)