Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0059
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   5.9  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   5.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   7.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.8  

>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 550 SVFSFLSVVYSMISVLI 600
           SVFSFL +V S I +L+
Sbjct: 67  SVFSFLILVSSYIVILV 83


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 465 YR*HK*LVAPCFFLNI 512
           +R H+ L+AP F LN+
Sbjct: 134 WRNHRKLIAPTFHLNV 149


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/15 (40%), Positives = 14/15 (93%)
 Frame = +1

Query: 562 FLSVVYSMISVLIAY 606
           ++++VYS++ ++IAY
Sbjct: 93  WITMVYSLLGIIIAY 107


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 564 PVSCIFYDFSVDCIF 608
           PVS +  D+S+DC F
Sbjct: 75  PVSELDMDYSMDCYF 89


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 87  LTLDTIINDKSNLLENW 137
           LT   I +++ NLLE W
Sbjct: 479 LTAIVIFSERPNLLEGW 495


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,479
Number of Sequences: 438
Number of extensions: 3171
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)