Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0059
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40750.1 68418.m04945 hypothetical protein                          30   1.5  
At1g01340.1 68414.m00049 cyclic nucleotide-regulated ion channel...    28   4.7  

>At5g40750.1 68418.m04945 hypothetical protein 
          Length = 297

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -3

Query: 646 ILFIYSTLFDMLQNMQSTLKS*NIQLTGKKKPNNT*KCGGKTLLLIFKKKHGATS 482
           ++++YS   D      S+++   I+L+   KPN+   C    L +   K++GATS
Sbjct: 167 VIYVYSYPDDKFMRSLSSVRYLEIRLSVATKPNDIPPCLSTKLKIFEWKEYGATS 221


>At1g01340.1 68414.m00049 cyclic nucleotide-regulated ion channel
           (CNGC10) (ACBK1) almost identical to CaM-regulated
           potassium ion channel (ACBK1) GI:8515883 from
           [Arabidopsis thaliana]; contains Pfam domain, PF00520:
           Ion transport protein
          Length = 706

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 87  LTLDTIINDKSNLLENWHRLFTSILTYVNSSCLTARLCDSTFFFI 221
           +T   IIN + + L+NW+++F         +C+ A   D  FF+I
Sbjct: 58  VTRKNIINPQDSFLQNWNKIFL-------FACVVALAIDPLFFYI 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,768,428
Number of Sequences: 28952
Number of extensions: 210948
Number of successful extensions: 394
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)