Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0058
         (357 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   1.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   5.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   5.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          20   6.6  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    20   8.7  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 298 TTAERPVVRSYHPRDMP 248
           T+A  P+VRSY P   P
Sbjct: 280 TSAATPLVRSYAPERYP 296


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 51  VMHVLRKKPIASISAIQMGFDVAS 122
           V+ +  +KP +    ++MG D+AS
Sbjct: 200 VVAMFSRKPCSINENLKMGLDIAS 223


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 51  VMHVLRKKPIASISAIQMGFDVAS 122
           V+ +  +KP +    ++MG D+AS
Sbjct: 200 VVAMFSRKPCSINENLKMGLDIAS 223


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 222 LAESGKDMLTVEPRESGGSKQCDFTS 145
           L +S  D     PR  GG+K   F++
Sbjct: 97  LKDSSSDSEDERPRPGGGTKYQTFSN 122


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 65  KKKTDSIDLRDPNGLRRRVSRFECETRLVK 154
           +KKT     +  NGL RR+      T+L++
Sbjct: 120 EKKTTRKSSQQENGLPRRLRTAYTNTQLLE 149


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,604
Number of Sequences: 336
Number of extensions: 1562
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7193380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)