Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0058
(357 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 3.5
SPAC22G7.11c ||SPAC4G8.01c|conserved fungal protein|Schizosaccha... 25 4.6
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 24 6.1
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 24 6.1
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo... 24 6.1
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy... 24 6.1
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 24 8.0
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 24 8.0
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom... 24 8.0
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 24 8.0
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.0 bits (52), Expect = 3.5
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Frame = -1
Query: 156 DFTSR-----VSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSG 34
DF+SR + + RRR P SRR + RA ++R SG
Sbjct: 5 DFSSRSLFLEAKEEEYKQRRRVPLDSRRRVRRACLSCRAKKIRCSG 50
>SPAC22G7.11c ||SPAC4G8.01c|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 24.6 bits (51), Expect = 4.6
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 282 GRSAVVHEPNVRNCGSSRTEQY 347
G+ A +H PNV R E Y
Sbjct: 10 GKKATLHNPNVSQQAKERAEDY 31
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 24.2 bits (50), Expect = 6.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 331 EEPQFRTFGSCTTAERPVVRSYHPRDMPER 242
+ P R S T+ E+P VR+ +D P R
Sbjct: 51 KSPLERLANSVTSPEKPTVRTAIQKDSPRR 80
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 24.2 bits (50), Expect = 6.1
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 154 LY*SRFAFKTR-DATSKPIWIAEIDAIGFFLNTCI 53
LY +F R ATS I + EID G+F N+ +
Sbjct: 467 LYYKKFVEAIRASATSMAIALEEIDEYGYFHNSFV 501
>SPAC23H3.02c |ini1||RING finger-like protein
Ini1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 24.2 bits (50), Expect = 6.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 306 PNVRNCGSSRTEQYYYR 356
P V N GSSRT+ +Y R
Sbjct: 86 PRVINLGSSRTDWFYER 102
>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 24.2 bits (50), Expect = 6.1
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 89 LRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDS 217
L P+G R VS + +++K+ C P SRG TV PD+
Sbjct: 6 LSSPSGAR--VSSVTVKNKVLKTPCFFLPTSRG-TVPHLTPDN 45
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 23.8 bits (49), Expect = 8.0
Identities = 6/24 (25%), Positives = 15/24 (62%)
Frame = -3
Query: 133 FKTRDATSKPIWIAEIDAIGFFLN 62
++T++ + IW+ I +G++ N
Sbjct: 236 YETQEQITASIWVEHISKLGYYFN 259
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 23.8 bits (49), Expect = 8.0
Identities = 17/73 (23%), Positives = 29/73 (39%)
Frame = -1
Query: 234 AEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRA 55
+ +++ GK+ V P + DF + +S S+ ++S G R
Sbjct: 306 SSSTVERKGKEASEVNPNSTSSVTFSDFAAAISRSRCSRCKKSKKGCDRQ-------RPC 358
Query: 54 SRLRRSGYNSVRC 16
R R +G NS C
Sbjct: 359 GRCRDAGLNSEDC 371
>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 23.8 bits (49), Expect = 8.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 106 PIWIAEIDAIGFFLNTCITAP 44
P W+AE+ AI F++ + AP
Sbjct: 43 PFWLAEVLAINSFVSIHMPAP 63
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 23.8 bits (49), Expect = 8.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -1
Query: 273 EATIRGICLNASKAEASLAESGKDMLTVEPRESGGSKQ 160
EA A +AEA E+ K+++ EP+++ +K+
Sbjct: 93 EAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,494,824
Number of Sequences: 5004
Number of extensions: 27326
Number of successful extensions: 80
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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