Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0058
(357 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 0.35
07_03_0846 - 21983581-21986055 29 0.81
06_03_1191 + 28286685-28287008,28287149-28287211,28287377-282874... 29 1.4
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 2.5
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 3.3
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164... 27 4.3
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171... 27 4.3
01_05_0118 + 18335065-18335553 27 4.3
11_07_0014 + 27379941-27379974,27381975-27382033,27382561-273827... 27 5.7
09_02_0267 - 6485428-6485895,6488255-6488303,6488466-6488469,648... 27 5.7
06_01_0655 + 4742267-4742531,4743313-4744136 27 5.7
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 27 5.7
05_04_0281 + 19779156-19779805,19781303-19781475,19781909-197821... 26 7.6
05_01_0314 - 2466617-2467060 26 7.6
02_05_0814 - 31970558-31971126,31971242-31971413 26 7.6
01_01_0785 - 6076089-6077615 26 7.6
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 0.35
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -1
Query: 228 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 94
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 0.81
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 86 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 235
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>06_03_1191 +
28286685-28287008,28287149-28287211,28287377-28287461,
28287561-28287623,28287954-28288029,28288190-28288223,
28289553-28289659,28289738-28289807,28289852-28289950
Length = 306
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 164 LEPPDSRGSTVSISLPDSARLASALEAFRHIPRMVASHHRPLGRSA 301
L P D + LP A+ FR P V+SH R G+S+
Sbjct: 62 LPPRDELRTLFIAGLPGDAKAREVYNLFRDFPGYVSSHLRTSGKSS 107
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 2.5
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -1
Query: 237 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 64
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 63 TRASR 49
TRA+R
Sbjct: 64 TRAAR 68
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 209 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 105
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>08_02_1081 +
24215323-24215335,24215450-24215572,24216241-24216489,
24218517-24218720,24218864-24218993,24219610-24219679,
24219766-24219900,24219996-24220209,24220314-24220455,
24220630-24220851,24220997-24221195
Length = 566
Score = 27.1 bits (57), Expect = 4.3
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 177 SGGSKQCDFTSRVSHSKRETRRRSPFGSRRSML 79
S G+ Q T R HS E RRRS R +L
Sbjct: 212 SAGTDQMPNTPRSKHSATEQRRRSKINDRFQLL 244
>01_07_0124 +
41212728-41212922,41215156-41215210,41215336-41217128,
41217363-41217521,41217883-41218054,41218173-41218471,
41219060-41219368
Length = 993
Score = 27.1 bits (57), Expect = 4.3
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +2
Query: 68 KKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 247
KKT ++ + P+ R + + + +V S C D G+ ++ + R+ASA++AF
Sbjct: 566 KKTMAVVIASPSAGGRPRAFLKGASEVVLSRCSLVLDGTGNVEKLTDAKAKRVASAIDAF 625
>01_05_0118 + 18335065-18335553
Length = 162
Score = 27.1 bits (57), Expect = 4.3
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 219 AESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSR 91
A+ G + V P +GG+++ + ++ K T RR+ FG+R
Sbjct: 18 AQDGHRLPDVAPA-AGGTREPEHARLIARRKESTYRRTAFGNR 59
>11_07_0014 +
27379941-27379974,27381975-27382033,27382561-27382782,
27383727-27383810,27385054-27385131,27385716-27385832,
27385956-27386019,27386399-27386402,27386565-27386613,
27388973-27389440
Length = 392
Score = 26.6 bits (56), Expect = 5.7
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 53 DARVKKKTDSIDLRDPNGLRRRVSRFE-CETRLVKSHCLEPPDSRGSTVSISLPDSARLA 229
D KKK S + N R+RV+ FE +R + L S +T +LPD+ L
Sbjct: 253 DGEPKKKPTSTPSQKRNNKRKRVTAFERLWSRAGELRILRAMASHTNTHRSTLPDTCDLF 312
Query: 230 SAL 238
+ L
Sbjct: 313 ATL 315
>09_02_0267 -
6485428-6485895,6488255-6488303,6488466-6488469,
6488849-6488912,6489036-6489152,6489737-6489814,
6491058-6491141,6492086-6492307,6492835-6492893,
6494894-6494927
Length = 392
Score = 26.6 bits (56), Expect = 5.7
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 53 DARVKKKTDSIDLRDPNGLRRRVSRFE-CETRLVKSHCLEPPDSRGSTVSISLPDSARLA 229
D KKK S + N R+RV+ FE +R + L S +T +LPD+ L
Sbjct: 253 DGEPKKKPTSTPSQKRNNKRKRVTAFERLWSRAGELRILRAMASHTNTHRSTLPDTCDLF 312
Query: 230 SAL 238
+ L
Sbjct: 313 ATL 315
>06_01_0655 + 4742267-4742531,4743313-4744136
Length = 362
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 86 DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLAS 232
++RDP G+R + F +++ E RG ++ PD A +AS
Sbjct: 129 EIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGAPVAS 178
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 26.6 bits (56), Expect = 5.7
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 128 FECETRLVKSHCLE---PPDSRGSTVSISLPDSARLASALEAFRH 253
F + RL K HCLE P+S+ S+V +++ + A+ E H
Sbjct: 524 FMWDMRLSKKHCLELIGHPESQFSSVKLNIDNRTVFAATKEGTVH 568
>05_04_0281 +
19779156-19779805,19781303-19781475,19781909-19782162,
19782265-19782339,19782431-19782538,19782914-19783031,
19783347-19783482,19785623-19785797,19786333-19786860,
19787624-19787836,19787850-19787882
Length = 820
Score = 26.2 bits (55), Expect = 7.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 241 GVQAYPADGSFAPPAARP*CMNQMSETAVPLVLSS 345
G++A PA+ + PPA P +E A P L S
Sbjct: 50 GIEADPAEAALLPPAPSPQPAEAEAEAAGPASLPS 84
>05_01_0314 - 2466617-2467060
Length = 147
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 313 TFGSCTTAERPVVRSYHPRDMPE 245
T + T A+RP SYHP + E
Sbjct: 108 TLSAATAADRPACASYHPAEDAE 130
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 293 GRAAGGAKLPSAGYA*TPLRPKPA*PNP 210
G GG PS+ + TP P P+ P P
Sbjct: 135 GGGGGGGSTPSSPSSPTPTTPNPSTPTP 162
>01_01_0785 - 6076089-6077615
Length = 508
Score = 26.2 bits (55), Expect = 7.6
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 209 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEAH 102
A + SLWSPES E + + Q R+V H
Sbjct: 336 AEVASLWSPESGEPITAEKIAEMKYTQAVAREVVRH 371
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,790,675
Number of Sequences: 37544
Number of extensions: 223477
Number of successful extensions: 738
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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