Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0058
         (357 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   4.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   5.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   7.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   7.6  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 273 RTTGRSAVVHEPNVRNCGSSRTEQ 344
           R   RSA+VH     N  SS + +
Sbjct: 738 RVENRSAIVHSEASANANSSTSSE 761


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 132 SKRE-TRRRSPFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE 4
           ++RE  R  +PF +  +  S   L RA    RSG  SV+   +E
Sbjct: 502 ARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTE 545


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 10/35 (28%), Positives = 13/35 (37%)
 Frame = +1

Query: 190 HSEHIXXXXXXXXXXXRGVQAYPADGSFAPPAARP 294
           H  H+            GV  YP+   F PP+  P
Sbjct: 286 HHSHLSSALGRSACHSPGV--YPSTAGFLPPSYHP 318


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 159  CDFTSRVSHSKRETRRRSP 103
            CD    V HS ++T+++ P
Sbjct: 1487 CDSKLIVDHSSQKTQQQQP 1505


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,424
Number of Sequences: 438
Number of extensions: 1634
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)