Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0058
(357 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g67970.1 68414.m07764 heat shock factor protein, putative (HS... 29 1.2
At5g11090.1 68418.m01295 serine-rich protein-related contains so... 27 2.8
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain... 27 2.8
At1g14740.1 68414.m01762 expressed protein 27 2.8
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei... 27 2.8
At3g15320.1 68416.m01934 hypothetical protein contains similarit... 27 3.7
At5g32620.1 68418.m03883 hypothetical protein contains similarit... 26 6.4
At4g26190.1 68417.m03770 expressed protein 26 6.4
At2g39740.1 68415.m04880 expressed protein 26 6.4
At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xy... 26 8.5
At3g53440.2 68416.m05898 expressed protein 26 8.5
At3g53440.1 68416.m05897 expressed protein 26 8.5
At2g17550.1 68415.m02031 expressed protein 26 8.5
>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
/ heat shock transcription factor, putative (HSTF5)
identical to heat shock transcription factor 5 (HSF5)
SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
profile: PF00447 HSF-type DNA-binding domain
Length = 374
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = -1
Query: 309 LVHALRPSGRWCEATIRGICLNASKAEASLAESGKDMLTVEPRESGGSKQCD 154
++ L G W + + +K + ++ + GKD LT+E E G+ + D
Sbjct: 278 IIPDLYDDGAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329
>At5g11090.1 68418.m01295 serine-rich protein-related contains some
similarity to serine-rich proteins
Length = 217
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 330 RNRSFGHLVHALRPSGRWCEATIRGICLNASKAEASLAES 211
R +S G ++ + PSGR+C R + ++S A AS S
Sbjct: 7 RTKSNGPVLRSQSPSGRFCGGYSRAVPSSSSSAFASSTSS 46
>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein
Length = 564
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 8 EPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 160
+PR R LY D + + + K+T S+D+ NG + S+ E R+ + H
Sbjct: 149 KPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196
>At1g14740.1 68414.m01762 expressed protein
Length = 733
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -1
Query: 273 EATIRGICLNASKAEASLAESGKDMLTVEPRESGGSK--QCDFTSRVSHSKRETRRRS 106
E T+ +C N+ K SL + GK+++T S K + DF + + ++R++
Sbjct: 69 ELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYDDKWVERDFFNLREMNPNSSKRKA 126
>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
hsp20 family protein contains Pfam profile: PF00011
Hsp20/alpha crystallin family
Length = 285
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 236 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 96
RPK P A + ++WSP S A + + +VA + A D+ +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216
>At3g15320.1 68416.m01934 hypothetical protein contains similarity
to hypothetical proteins of [Arabidopsis thaliana]
Length = 287
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -1
Query: 333 ERNRSFGHLVHALRPSGRWCEATIRGICLNASKAEASLAESGKDMLTVE 187
++N + H LR +WCEAT R NA + + + + VE
Sbjct: 145 KKNFTLDHAWRELRYDQKWCEATSRKGDKNAKRKKCGDGNASSQPIHVE 193
>At5g32620.1 68418.m03883 hypothetical protein contains similarity
to hypothetical proteins
Length = 301
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -1
Query: 333 ERNRSFGHLVHALRPSGRWCEATIRGICLNASKAEASLAESGKDMLTVE 187
++N + H LR +WCEAT R NA + + + + VE
Sbjct: 159 KKNFTLDHAWRELRYDQKWCEATSRKGDENAKRRKCGDGNASSHPIHVE 207
>At4g26190.1 68417.m03770 expressed protein
Length = 1067
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -3
Query: 133 FKTRDATSKPIWIAEIDAIGFFLNTCITAPK 41
FKT++ KP+++ ++ + + TCI+ K
Sbjct: 944 FKTQEKKDKPLFLKDLRRVWDHIGTCISCGK 974
>At2g39740.1 68415.m04880 expressed protein
Length = 474
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 345 TAQYERNRSFGHLVHALRPSGRW 277
T + ++ GHL+ ALR SG W
Sbjct: 82 TGKKQKQTLLGHLLRALRASGLW 104
>At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xylan
endohydrolase isoenzyme X-I, Hordeum
vulgare,PID:g1813595
Length = 544
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 142 RFAFKTRDATSKPIWIAEID 83
R A T AT PIW+ EID
Sbjct: 398 RSALDTLGATGLPIWLTEID 417
>At3g53440.2 68416.m05898 expressed protein
Length = 512
Score = 25.8 bits (54), Expect = 8.5
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +2
Query: 8 EPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRG 187
+P R+ L++RD++VK + D +P RR RLV S DSR
Sbjct: 12 QPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSDSPIEDSRS 71
Query: 188 STVSIS 205
++IS
Sbjct: 72 KKLNIS 77
>At3g53440.1 68416.m05897 expressed protein
Length = 512
Score = 25.8 bits (54), Expect = 8.5
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +2
Query: 8 EPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRG 187
+P R+ L++RD++VK + D +P RR RLV S DSR
Sbjct: 12 QPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSDSPIEDSRS 71
Query: 188 STVSIS 205
++IS
Sbjct: 72 KKLNIS 77
>At2g17550.1 68415.m02031 expressed protein
Length = 765
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = +2
Query: 44 RSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSAR 223
R+ D + T + + D N LRR+++ E E ++ EP + V + PD
Sbjct: 527 RNVDYLSQVSTPDVTVSDENELRRQINELESEVQVRTPVEEEPIQEIETIVDLGNPDKVF 586
Query: 224 LASALEA 244
+ L A
Sbjct: 587 VRDLLVA 593
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,180,163
Number of Sequences: 28952
Number of extensions: 159875
Number of successful extensions: 457
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -