Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0056
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.76 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.76 
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   3.0  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    26   5.3  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   5.3  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    26   7.0  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   9.3  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   9.3  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 271 SGCGRCRVWSMFVRYVRFSE 330
           +GCG+  VW  +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 455 ARKIRGRPENAGPDPVRNVRRFSRV 381
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 142 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 14
           A  GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 247 RGVRVWTGSGCGRC-RVWSMFVRYVRFS 327
           RG+++W G   G C R    +V++V FS
Sbjct: 214 RGIQLWGGESWGMCARFLHPYVKFVDFS 241


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +3

Query: 399 YVSDWIRTRVLRPSADLPSRKVVSVSFRAR----SARFCTTPFNGQLRTGTDKGNPTV*L 566
           + S+WI     + S  + +R V+ V+        SA F  T  NG     TDK +P + L
Sbjct: 773 HTSNWIYKHCFQSSL-MENRTVILVTHNVHLFMDSAAFIVTVKNGSAFPVTDKSSPLLFL 831

Query: 567 KQSIAMA 587
            +  A A
Sbjct: 832 AEQAASA 838


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 241 EDRGVRVWTGSGCGRC 288
           EDR +R+W G  C +C
Sbjct: 235 EDRTIRIWKGKECLQC 250


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 197 FPYLHYSID*RLFTLETCCGYGYEPARHL 111
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 701 GYLKRVIVTPAVYPRLLEFLHVDIQST 621
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,272,482
Number of Sequences: 5004
Number of extensions: 66989
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)