Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0056
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664...    32   0.45 
01_06_0305 - 28348398-28349306                                         31   1.4  
01_07_0385 - 43212580-43213142,43213234-43213612                       30   1.8  
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    30   2.4  
01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872     29   4.2  
05_06_0064 + 25297268-25297612,25298150-25298237,25299608-252997...    29   5.5  
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414     28   7.3  
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853     28   9.7  

>09_06_0328 +
           22365308-22365415,22365743-22366018,22366166-22366417,
           22366542-22366939,22367028-22368021,22368199-22368409,
           22368515-22368749,22368874-22368996,22369190-22369310,
           22369416-22369625
          Length = 975

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = +1

Query: 205 NWIRNFGIRIGSED---RGVRVWTGSGCGRCRVWSM 303
           +WIR+ G++I S D    G+R  TG G  + R+WSM
Sbjct: 7   SWIRHEGLQIFSIDIQPGGIRFATGGGDQKIRIWSM 42


>01_06_0305 - 28348398-28349306
          Length = 302

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = +2

Query: 479 SCAIGTILYDAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQ 652
           +CA G  LYD V  +  N +G G +  L    HC+   G  ++ +S++ S CQ+  ++
Sbjct: 48  TCATG--LYDFVNIAFLNVYGSGLTPVLNLAAHCNPDAGTCKS-LSSEISSCQQSGVK 102


>01_07_0385 - 43212580-43213142,43213234-43213612
          Length = 313

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 287 HRPHPLPVQTRTPRSSEP 234
           H PHPLP + R PR S P
Sbjct: 265 HEPHPLPARPRKPRPSGP 282


>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 719 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 618
           LDDE   YL  R  V   +  RLL+F++VD  STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313


>01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872
          Length = 686

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +2

Query: 461 GRVGFVSCAIGTILYDAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQ 637
           G  G +    GT LY  V  +  +  G G +  L    HCD P G   + ++A  + CQ
Sbjct: 39  GSEGTLGETCGTGLYAYVNLAFLSTFGAGRAPVLNLADHCDAPSGTCAS-LAADIASCQ 96


>05_06_0064 +
           25297268-25297612,25298150-25298237,25299608-25299719,
           25300417-25300972
          Length = 366

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 283 GRIRFPSKPERPGPQSQSLFRSYGSNLPTSLTYIILS 173
           GRI FPS  ++PGP+   +      N   S  Y+ LS
Sbjct: 105 GRITFPSSLKQPGPRDAPMHCFIRRNKKNSTFYLYLS 141


>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
          Length = 520

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 187 YIILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSG 62
           + +L+ RG  P +PAA     RRD   ++P  + Q P    G
Sbjct: 28  HAVLAVRGPRPLQPAASASFRRRDRWFHLPLHDPQPPPAAEG 69


>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
          Length = 625

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -3

Query: 140 GYGYEPARHLHVHPSPEFSRSAES-IRTPPQMRCSSRSEPYLPSI 9
           G+   P+ H    P P+      S  R PP  R S RSE   P +
Sbjct: 26  GFDVTPSPHAEPSPRPQLRHDNPSRSRVPPLERVSRRSEVVFPPL 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,764,739
Number of Sequences: 37544
Number of extensions: 500268
Number of successful extensions: 1591
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)