Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0056
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p...    30   2.2  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   2.9  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   2.9  

>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
            C25H3.8 protein.
          Length = 2148

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 317  T*RTNIDQTRHRPHPLPVQTRTPRSSEPILIPKLRIQFADFPYLHYSI 174
            T +++ID T H PHP+ VQT   +  E + +    +      + H ++
Sbjct: 904  TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPLEFAHCTL 951


>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical
           protein T11B7.4d protein.
          Length = 1424

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -1

Query: 268 PSKPERPGPQSQSLFRSYGSNLPTSLTYIILSTR-GSSP--WRPAADMGTNR 122
           P  P  P P ++   +S   NLP S+   +   R G SP  W P A   TNR
Sbjct: 410 PPVPSNPPPSNEQQSQSRVQNLPDSVRSAVSPRRSGKSPRQWPPPAMPTTNR 461


>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
           protein T11B7.4d protein.
          Length = 1424

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -1

Query: 268 PSKPERPGPQSQSLFRSYGSNLPTSLTYIILSTR-GSSP--WRPAADMGTNR 122
           P  P  P P ++   +S   NLP S+   +   R G SP  W P A   TNR
Sbjct: 410 PPVPSNPPPSNEQQSQSRVQNLPDSVRSAVSPRRSGKSPRQWPPPAMPTTNR 461


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 533 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 664
           W+  G   C+ + K CDG + C       QCS+     +   AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 533 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 664
           W+  G   C+ + K CDG + C       QCS+     +   AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,364,168
Number of Sequences: 27780
Number of extensions: 388470
Number of successful extensions: 1111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)