Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0056
(787 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 25 0.80
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 4.3
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 4.3
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 22 7.4
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 22 7.4
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 22 7.4
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 22 7.4
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 22 7.4
DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex det... 21 9.8
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 25.0 bits (52), Expect = 0.80
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +2
Query: 455 P*GR-VGFVSCAIGTILYDAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 631
P GR V + IGT + +AV + +G+ + + C G +V +C+E
Sbjct: 205 PTGREVALIEQTIGTCVANAVVIEQPTFLCKGDGKWYLPSGGCHCKPGYQADVEKQECTE 264
Query: 632 CQREEIQASAG 664
C + + AG
Sbjct: 265 CPIGKFKHEAG 275
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 4.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 270 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 368
K +RPV DV +C ++S LI LKN I
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 4.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 270 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 368
K +RPV DV +C ++S LI LKN I
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.8 bits (44), Expect = 7.4
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = -3
Query: 470 RHDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQT 291
+++ + RK R + D R R S+ I ++ ++ N N+ K+ NI+
Sbjct: 51 KNENSYRKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYI 108
Query: 290 RHRPHPLPV 264
P P+PV
Sbjct: 109 EQIPVPVPV 117
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.8 bits (44), Expect = 7.4
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = -3
Query: 470 RHDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQT 291
+++ + RK R + D R R S+ I ++ ++ N N+ K+ NI+
Sbjct: 51 KNENSYRKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYI 108
Query: 290 RHRPHPLPV 264
P P+PV
Sbjct: 109 EQIPVPVPV 117
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.8 bits (44), Expect = 7.4
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = -3
Query: 470 RHDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQT 291
+++ + RK R + D R R S+ I ++ ++ N N+ K+ NI+
Sbjct: 51 KNENSYRKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYI 108
Query: 290 RHRPHPLPV 264
P P+PV
Sbjct: 109 EQIPVPVPV 117
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.8 bits (44), Expect = 7.4
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = -3
Query: 470 RHDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQT 291
+++ + RK R + D R R S+ I ++ ++ N N+ K+ NI+
Sbjct: 284 KNENSYRKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYI 341
Query: 290 RHRPHPLPV 264
P P+PV
Sbjct: 342 EQIPVPVPV 350
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.8 bits (44), Expect = 7.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 310 ARTSTRPGTGRIRFPSKPERP 248
A T+ RPGT + KP++P
Sbjct: 1111 AATNIRPGTADNKPQLKPQKP 1131
>DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex
determiner protein.
Length = 176
Score = 21.4 bits (43), Expect = 9.8
Identities = 16/69 (23%), Positives = 31/69 (44%)
Frame = -3
Query: 470 RHDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQT 291
+++ + RK R + D R R S+ I ++ ++ N N+ K+ NI+
Sbjct: 51 KNENSYRKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYI 108
Query: 290 RHRPHPLPV 264
P P+P+
Sbjct: 109 EQIPVPVPI 117
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,476
Number of Sequences: 438
Number of extensions: 5463
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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