Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0054
         (759 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    25   0.87 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.5  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   4.6  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   4.6  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   8.1  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +3

Query: 276 WINEIPTVPI 305
           W+NEIPT+P+
Sbjct: 321 WLNEIPTMPV 330


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 446 SSLKNHYFHCFITYSVGRK 502
           SS    +FHC+     GRK
Sbjct: 416 SSFFQQFFHCYCPIKFGRK 434


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 670 ALFFDRCTAPVKLPAWQC 617
           +L+F  CTA  ++  W C
Sbjct: 223 SLWFINCTAKGRVAVWMC 240


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 670 ALFFDRCTAPVKLPAWQC 617
           +L+F  CTA  ++  W C
Sbjct: 223 SLWFINCTAKGRVAVWMC 240


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 539 NTVRPPILSTGTASAQPSK**NNESSGFS--ATIARNDLPLML 417
           N   PPI S  T+  +P    N + SG++    I +  +P++L
Sbjct: 151 NDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVIL 193


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,587
Number of Sequences: 336
Number of extensions: 3598
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)