Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0054
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    28   1.7  
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    27   2.9  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   2.9  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    26   6.7  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    26   6.7  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   8.9  

>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
 Frame = -2

Query: 635 TPRL-AVSSNRITREF*T----ATTFPPRHHSARLERNTVRPPILSTGTASAQPS 486
           TPR  + +SN IT +  T     ++ P +H+S     NT+R P L++  +SA  S
Sbjct: 718 TPRFPSFTSNGITTDKPTLPDTTSSVPTQHNSFDAMHNTLRSPSLNSNNSSAHAS 772


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 649 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMF 750
           Y+C  +  +S G L  SED ++ W    K GLI+ F
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQF 162


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 675 HLRYSLTDVPPQSNSPPGS-VLEPDHAGVLNGDDVSATSPLCTLGTK 538
           HLR S+  V   S SPP S  L+P H+ + N    S+  P   LG++
Sbjct: 169 HLRSSMPLVMANSLSPPSSRALKPIHS-LSNPSTASSLEPSSPLGSE 214


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 436 FRAIVAEKPLLSLFHYLLGWAEAVPVD 516
           F++    +P   LFHYL G+    P+D
Sbjct: 312 FKSSQKHQPRNWLFHYLFGFGSTEPID 338


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -1

Query: 573 SATSPLCTLGTKHRAPADIIDRHRFRPTE*VMKQ*K*WFFSDDRAKRSPTYATPLMSPYN 394
           S  +PL  LG     P D++ +HR    E  +   K   FS    +   TY  P MS   
Sbjct: 247 SGRAPLHLLGVSMNQPIDVVVQHRM--DEDYVAPFK--PFSGKGQRLGSTYMQPRMSQMP 302

Query: 393 ARL-ESSSTGSSFP 355
             L   +ST SS P
Sbjct: 303 GGLYTDTSTSSSVP 316


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 241 GYLKRVIVTPAVYPRLLEFLHVDIQST 161
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,053,595
Number of Sequences: 5004
Number of extensions: 60925
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)