Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0054
(759 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 32 0.43
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 31 1.00
05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778 30 1.7
03_04_0006 + 16257288-16259522 30 2.3
06_03_0854 + 25400855-25403741,25406174-25407708 29 4.0
07_03_1671 + 28512585-28513424 28 7.0
12_02_0077 - 13288916-13289659,13289689-13289691 28 9.3
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555... 28 9.3
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647... 28 9.3
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550... 28 9.3
>03_05_1065 +
30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 32.3 bits (70), Expect = 0.43
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = -1
Query: 732 SFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAGVLNGDDVSATSPLC 553
+F P+ P LA + GH R+ + D + S G + D + + VSA + LC
Sbjct: 371 AFHPYLP-----LATTSSGHRRFGMEDEIEEELSLAGIFNKGDRSYAVRRAAVSAYAALC 425
Query: 552 TLGTKHRAPADIIDR 508
+ H AP + DR
Sbjct: 426 AVLCAHEAPGGLPDR 440
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 31.1 bits (67), Expect = 1.00
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 648 PPQSNSPPGSVLEPDHAGVLNGDDVSATSPLCTLGTKH 535
P +NS P +V +PD +LNGD++ T L + +H
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDEIQQTFELNSQEIQH 776
>05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778
Length = 1104
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = +2
Query: 542 VPSVQSGD--VAETSSPFKTPA*----SGSRTLPGGEFDWGGTSVKE*RRCPKA 685
VP V + D VAE S P+ +P+ SGS P G D GG ++ R CP A
Sbjct: 739 VPRVMNDDNGVAEGSPPWSSPSTRRRLSGSSAKPDGHKDGGGATLPS-RGCPAA 791
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -1
Query: 441 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 289
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 441 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 316
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>07_03_1671 + 28512585-28513424
Length = 279
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 494 GRKRCRSIISAGARCFVPSVQSGDVAETSSPFKTPA*SGSRTLPGG 631
GR+R S + PSV SGD P + P SG+ GG
Sbjct: 27 GRRRLLSTSTEAGGAGDPSVHSGDPPSDDYPDRPPKFSGAEEATGG 72
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 384 ESSSTGSSFPADSPKPVPLAVVSLDSR 304
++ S G S P DS + VP+ VV+L R
Sbjct: 3 DNQSLGKSLPKDSRRHVPVGVVALKKR 29
>12_01_0655 +
5546293-5546478,5546760-5546877,5550697-5550776,
5551329-5552345,5552523-5553344,5553528-5553800
Length = 831
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 40 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCS 168
C T RS N H + CL+ +H G NVI +CS
Sbjct: 242 CDTERARSDTNEHNIYDGCCLLDVQHTQSFPGNGANVIPTKCS 284
>04_04_0433 +
25163111-25163471,25163943-25164154,25164420-25164701,
25164794-25164916,25165511-25165664,25165754-25165965,
25166143-25166212,25166294-25166424
Length = 514
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 40 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC-*RNVISAQCS 168
CT++ +R A W G G L HC P V+S +CS
Sbjct: 26 CTSSSRRRASPWGGAGRLIRLRLRGHCPSPASARAARVVSPRCS 69
>04_01_0416 -
5504415-5504590,5509032-5509116,5509190-5509322,
5509426-5510312
Length = 426
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -1
Query: 414 PLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDS 307
PL+ P AR SSTGSSFP S P ++ L S
Sbjct: 47 PLIHPTPARF-ISSTGSSFPPYSEPPPSAPMLELGS 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,496,679
Number of Sequences: 37544
Number of extensions: 465604
Number of successful extensions: 1514
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1511
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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