Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0054
         (759 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069812-1|AAL39957.1|  937|Drosophila melanogaster SD05477p pro...    30   3.9  
AE014298-1945|AAN09334.1|  937|Drosophila melanogaster CG32627-P...    30   3.9  
AE014298-1944|AAF48304.2| 1201|Drosophila melanogaster CG32627-P...    30   3.9  
AY061451-1|AAL28999.1|  249|Drosophila melanogaster LD38807p pro...    29   6.9  
AE014297-4228|AAF56784.1|  281|Drosophila melanogaster CG14065-P...    29   6.9  

>AY069812-1|AAL39957.1|  937|Drosophila melanogaster SD05477p
           protein.
          Length = 937

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = -1

Query: 741 DQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAGVLNGDDVSATS 562
           D +   P  P E  V+ E  + H+ Y +  VP   N+P G+ L+P   G  NG  V + S
Sbjct: 190 DCSQQAPRWPVECQVIEERII-HIPY-VPAVPEPLNAPTGNELKPRPVGEENGIVVFSYS 247

Query: 561 PL 556
           P+
Sbjct: 248 PI 249


>AE014298-1945|AAN09334.1|  937|Drosophila melanogaster CG32627-PB,
           isoform B protein.
          Length = 937

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = -1

Query: 741 DQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAGVLNGDDVSATS 562
           D +   P  P E  V+ E  + H+ Y +  VP   N+P G+ L+P   G  NG  V + S
Sbjct: 190 DCSQQAPRWPVECQVIEERII-HIPY-VPAVPEPLNAPTGNELKPRPVGEENGIVVFSYS 247

Query: 561 PL 556
           P+
Sbjct: 248 PI 249


>AE014298-1944|AAF48304.2| 1201|Drosophila melanogaster CG32627-PA,
           isoform A protein.
          Length = 1201

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = -1

Query: 741 DQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAGVLNGDDVSATS 562
           D +   P  P E  V+ E  + H+ Y +  VP   N+P G+ L+P   G  NG  V + S
Sbjct: 190 DCSQQAPRWPVECQVIEERII-HIPY-VPAVPEPLNAPTGNELKPRPVGEENGIVVFSYS 247

Query: 561 PL 556
           P+
Sbjct: 248 PI 249


>AY061451-1|AAL28999.1|  249|Drosophila melanogaster LD38807p
           protein.
          Length = 249

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -3

Query: 445 SRETISHLCYTSHVSL---QCQTRVKLNRVFFPR*FSQARSLGC 323
           S+ TI   CY  ++S    QCQ R+   +VFF    S A    C
Sbjct: 14  SKRTIFETCYMKNISFLKTQCQARILFCKVFFAVHSSNANVPSC 57


>AE014297-4228|AAF56784.1|  281|Drosophila melanogaster CG14065-PA
           protein.
          Length = 281

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 44/153 (28%), Positives = 68/153 (44%)
 Frame = +2

Query: 266 RA*MD*RDSHCPYLLSSETTAKGTGLGESAGKEDPVELDSSLAL*GDMRGVA*VGDRFAR 445
           RA +D +++  P L S ++ ++     E+AG E P+    SLA  G+ R  A  GD  A 
Sbjct: 52  RATVDNKENQ-PNLKSFKSWSEEAAAAEAAG-ESPIVGSVSLAQTGEKRAAASGGDNTAE 109

Query: 446 SSLKNHYFHCFITYSVGRKRCRSIISAGARCFVPSVQSGDVAETSSPFKTPA*SGSRTLP 625
           +S +    + F+      +R R      AR   P  Q    A      + P  +G R +P
Sbjct: 110 NSSELDDNNDFVPVLSHHRRDRK----KARKEKPRDQ--QPAGGRGDGQKPQQAGGRRVP 163

Query: 626 GGEFDWGGTSVKE*RRCPKASSARTETSRGAKG 724
           G   D    SV+   R P+  S R +++ GA G
Sbjct: 164 GSS-DTERKSVRP--RAPRGGSPR-KSAAGAAG 192


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,809,477
Number of Sequences: 53049
Number of extensions: 739229
Number of successful extensions: 2635
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2635
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3478915869
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)