Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0054
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51800.1 68418.m06423 expressed protein                             31   1.1  
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    29   3.4  
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    29   4.4  
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    29   4.4  
At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family p...    28   5.9  
At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family p...    28   5.9  
At4g27950.1 68417.m04010 AP2 domain-containing transcription fac...    28   5.9  

>At5g51800.1 68418.m06423 expressed protein
          Length = 972

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 222 MTLLR*PNASSLISDA-HEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSLTLVW 392
           M +LR P++SS I +  H+W N I  V  + L + +  ++  E      +LL+  ++W
Sbjct: 613 MAILRKPDSSSCIENVQHQWPNVIGYVKGFGLWRGEEADKVREGAADPSSLLAEKILW 670


>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 420 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 310
           A+ + SP+N+ L   S  SS  +D   P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -3

Query: 223 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 113
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 33  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -3

Query: 223 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 113
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 32  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68


>At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family
           protein contains Pfam PF03208: PRA1 family protein
          Length = 209

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 258 LVTRHLATLRES*LLPPFTRACLNFFTLTFRALGRNH 148
           L+  HLAT+  + L  P  +A  N F   FRA+ RN+
Sbjct: 170 LLIAHLATILHASLRTPNLKARFNTFREEFRAVWRNY 206


>At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family
           protein contains Pfam PF03208: PRA1 family protein
          Length = 209

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 258 LVTRHLATLRES*LLPPFTRACLNFFTLTFRALGRNH 148
           L+  HLAT+  + L  P  +A  N F   FRA+ RN+
Sbjct: 170 LLIAHLATILHASLRTPNLKARFNTFREEFRAVWRNY 206


>At4g27950.1 68417.m04010 AP2 domain-containing transcription
           factor, putative DNA-binding protein Pti6, Lycopersicon
           esculentum, gb:U89257
          Length = 335

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = -2

Query: 656 QMYRPSQTPRLAVSSNRITREF*TATTFPPRHHSARLERNTVRPPILSTGTASAQPSK 483
           ++ R S T R A  S+    EF     FP R     +    V P   STG  SA P+K
Sbjct: 41  RLVRVSMTDRDATDSSSDEEEF----LFPRRRVKRLINEIRVEPSSSSTGDVSASPTK 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,539,200
Number of Sequences: 28952
Number of extensions: 343468
Number of successful extensions: 1036
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)