Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0053
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43004| Best HMM Match : FAD_binding_4 (HMM E-Value=1.4e-18)         29   2.7  
SB_6544| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  

>SB_43004| Best HMM Match : FAD_binding_4 (HMM E-Value=1.4e-18)
          Length = 1067

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 21  WNHSQLVDPLFAMAFFFDISRQRSNVPNNVPRHNNKMRC 137
           W++S   +  F  AFFF + R  S  P N PR+   + C
Sbjct: 45  WSNS--TNKFFKSAFFFSLGRILSTCPLNRPRNRKLLAC 81


>SB_6544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
 Frame = +3

Query: 45  PLFAMAF-----FFDISRQRSNVPNNVPRHNNK 128
           PL  M F     F+++ RQ S +  N PR N+K
Sbjct: 264 PLLVMVFLNGKIFYEVLRQSSKIKKNFPRENSK 296


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,126,017
Number of Sequences: 59808
Number of extensions: 332969
Number of successful extensions: 757
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)