Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0053
         (688 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001573-1|AAN71328.1|  919|Drosophila melanogaster RE22749p pro...    31   2.0  
AY118301-1|AAM48330.1|  572|Drosophila melanogaster GH08318p pro...    31   2.0  
AE014297-4716|AAN14266.1|  738|Drosophila melanogaster CG1544-PB...    31   2.0  
AE014297-4715|AAF57126.2|  919|Drosophila melanogaster CG1544-PA...    31   2.0  
AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch dep...    29   7.9  
AF132141-1|AAD33588.1| 1095|Drosophila melanogaster G/T mismatch...    29   7.9  
AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA p...    29   7.9  

>BT001573-1|AAN71328.1|  919|Drosophila melanogaster RE22749p
           protein.
          Length = 919

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 18  KWNHSQLVDPLFAMAFFFDISRQRSNVPN 104
           +W H++L DP F     + I  QR +VP+
Sbjct: 432 RWGHNELDDPTFTNPLVYKIVHQRESVPD 460


>AY118301-1|AAM48330.1|  572|Drosophila melanogaster GH08318p
           protein.
          Length = 572

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 18  KWNHSQLVDPLFAMAFFFDISRQRSNVPN 104
           +W H++L DP F     + I  QR +VP+
Sbjct: 85  RWGHNELDDPTFTNPLVYKIVHQRESVPD 113


>AE014297-4716|AAN14266.1|  738|Drosophila melanogaster CG1544-PB,
           isoform B protein.
          Length = 738

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 18  KWNHSQLVDPLFAMAFFFDISRQRSNVPN 104
           +W H++L DP F     + I  QR +VP+
Sbjct: 251 RWGHNELDDPTFTNPLVYKIVHQRESVPD 279


>AE014297-4715|AAF57126.2|  919|Drosophila melanogaster CG1544-PA,
           isoform A protein.
          Length = 919

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 18  KWNHSQLVDPLFAMAFFFDISRQRSNVPN 104
           +W H++L DP F     + I  QR +VP+
Sbjct: 432 RWGHNELDDPTFTNPLVYKIVHQRESVPD 460


>AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch depedent
            uracil/thymineDNA glycosylase protein.
          Length = 1738

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 330  SCFHTITLQMYINSAYHNGRLPHLLGIVVYNNLNN 226
            SC   I   ++  SAYH+   PHL+G  +  N+NN
Sbjct: 1567 SCDTNIDYPIHNQSAYHH--TPHLIGSALGTNVNN 1599


>AF132141-1|AAD33588.1| 1095|Drosophila melanogaster G/T
            mismatch-specific thymineDNA glycosylase protein.
          Length = 1095

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 330  SCFHTITLQMYINSAYHNGRLPHLLGIVVYNNLNN 226
            SC   I   ++  SAYH+   PHL+G  +  N+NN
Sbjct: 924  SCDTNIDYPIHNQSAYHH--TPHLIGSALGTNVNN 956


>AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA
            protein.
          Length = 1738

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 330  SCFHTITLQMYINSAYHNGRLPHLLGIVVYNNLNN 226
            SC   I   ++  SAYH+   PHL+G  +  N+NN
Sbjct: 1567 SCDTNIDYPIHNQSAYHH--TPHLIGSALGTNVNN 1599


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,632,921
Number of Sequences: 53049
Number of extensions: 463414
Number of successful extensions: 966
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)