Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0053
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase ...    30   1.8  
AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered cut...    30   1.8  
Z82077-5|CAB63333.1|  783|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical...    27   9.5  
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a...    27   9.5  

>AF229855-1|AAF71303.1| 1497|Caenorhabditis elegans dual oxidase
            protein.
          Length = 1497

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 348  AATTVVSCFHTITLQMYINSAYHNGRLPHLLGIVVY 241
            A   V+   +   L  +I  AYH  RL HLL I  Y
Sbjct: 1138 ALVAVMCIIYVFALPCFIKRAYHAFRLTHLLNIAFY 1173


>AF043697-1|AAK73882.1| 1497|Caenorhabditis elegans Blistered cuticle
            protein 3 protein.
          Length = 1497

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 348  AATTVVSCFHTITLQMYINSAYHNGRLPHLLGIVVY 241
            A   V+   +   L  +I  AYH  RL HLL I  Y
Sbjct: 1138 ALVAVMCIIYVFALPCFIKRAYHAFRLTHLLNIAFY 1173


>Z82077-5|CAB63333.1|  783|Caenorhabditis elegans Hypothetical
           protein W09C5.7 protein.
          Length = 783

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 497 TARCNINLLLAFISRKKSRRRGAAVMRRNV 586
           T + N  L +  ISR+ +RR GA  +RR +
Sbjct: 219 TDQINAYLTITIISRRSTRRAGARYLRRGI 248


>Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical protein
            C16C10.3 protein.
          Length = 1032

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 3    IINRAKWNHSQLVDPLFAMAFFFDISRQRSNVPN 104
            ++N AKW+ ++L+   +  AF   +S Q  +VP+
Sbjct: 927  LVNDAKWSKNELMHLTYFRAFGHQVSYQPPSVPD 960


>AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical
            protein F53G12.3 protein.
          Length = 1503

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 336  VVSCFHTITLQMYINSAYHNGRLPHLLGIVVY 241
            V+S  +   L  +   AYH  RL HLL I  Y
Sbjct: 1148 VMSIIYVFALPKFTRRAYHAFRLTHLLNIGFY 1179


>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 80 protein.
          Length = 4900

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 75   ISRQRSNVPNNVPRHNNKMRCSSLNPIILKY 167
            I  +R N  + +   +N   CSS N IILKY
Sbjct: 2929 ILTERQNDHDRISEEDNTSSCSSENNIILKY 2959


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,663,389
Number of Sequences: 27780
Number of extensions: 256959
Number of successful extensions: 550
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)