Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0050
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   4.3  
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    26   4.3  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    25   7.5  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   9.9  

>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/60 (21%), Positives = 29/60 (48%)
 Frame = -2

Query: 389 VEEKSQMLPALPAINYCTVHIYSSGILVIPSINLNK*QQTQNYDTEMFILETKIEYQILH 210
           V EKS +   + A N C V++ +  ++ +P+++ +      +    +  + T+    ILH
Sbjct: 322 VSEKSSLATTVNATNECMVNLLTDSLIGMPTLDSDPLYIISSQQLSLDAVHTRNREFILH 381


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 426 YVTVALLRYYIVCRRKVADVASATGDK 346
           Y ++ +LR+YI C R  A++   T  K
Sbjct: 72  YFSIDILRFYIRCTRCAAEITFITDPK 98


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 522 VLEYSKNH*FISHELINSLID 460
           +L +   H ++SH LIN++ID
Sbjct: 329 ILGHELGHWYMSHNLINTIID 349


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 172  YQLSLNKI-SNLFLSVK*ISFCDKSQTKVQTNV 77
            Y+L L  I SN FLSV  I F +K      TNV
Sbjct: 963  YRLVLQTIGSNRFLSVVLIQFAEKMLLAKSTNV 995


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,120,980
Number of Sequences: 5004
Number of extensions: 40855
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)