Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0050
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97017-4|AAB52358.1|  156|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U97013-2|AAV58868.1|  190|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U97013-1|AAB52340.2|  270|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U97017-4|AAB52358.1|  156|Caenorhabditis elegans Hypothetical
           protein F47B3.3 protein.
          Length = 156

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +1

Query: 175 T*ILIFIGVYLL*SI*YSIFVSSMNISVS*F*VCCYLFKLIDGITSI 315
           T I + +G      + ++ FVSS+ I V+   +  YLF+++D + SI
Sbjct: 12  TFIFVMMGPAYYTGVGWATFVSSVGIFVTTSLLTLYLFRVVDTLPSI 58


>U97013-2|AAV58868.1|  190|Caenorhabditis elegans Hypothetical
           protein F28H1.4b protein.
          Length = 190

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +1

Query: 175 T*ILIFIGVYLL*SI*YSIFVSSMNISVS*F*VCCYLFKLIDGITSI 315
           T I + +G      + ++ FVSS+ I V+   +  YLF+++D + SI
Sbjct: 57  TFIFVMMGPAYYTGVGWATFVSSVGIFVTTSLLTLYLFRVVDTLPSI 103


>U97013-1|AAB52340.2|  270|Caenorhabditis elegans Hypothetical
           protein F28H1.4a protein.
          Length = 270

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +1

Query: 175 T*ILIFIGVYLL*SI*YSIFVSSMNISVS*F*VCCYLFKLIDGITSI 315
           T I + +G      + ++ FVSS+ I V+   +  YLF+++D + SI
Sbjct: 137 TFIFVMMGPAYYTGVGWATFVSSVGIFVTTSLLTLYLFRVVDTLPSI 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,439,299
Number of Sequences: 27780
Number of extensions: 220070
Number of successful extensions: 462
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)