Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0050
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    27   0.13 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    27   0.13 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.4  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 84  VCTFVCDLSQNEIYLTLRKRLEILFNESW*HVN 182
           VC+  C L  N+I LT+R  LE+ F     H+N
Sbjct: 241 VCSGNCKL--NDILLTVRPHLELTFENILSHIN 271


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 84  VCTFVCDLSQNEIYLTLRKRLEILFNESW*HVN 182
           VC+  C L  N+I LT+R  LE+ F     H+N
Sbjct: 241 VCSGNCKL--NDILLTVRPHLELTFENILSHIN 271


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 410 YSVTTSFVEEKSQMLPALPA 351
           ++   SF+E  ++ LP+LP+
Sbjct: 661 HTTPDSFIEAPNKTLPSLPS 680


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,573
Number of Sequences: 438
Number of extensions: 2825
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)