Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0050
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi do...    27   6.4  
At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containi...    27   6.4  

>At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi
           domain-containing protein similar to SP|Q9XGW1 PINHEAD
           protein (ZWILLE protein) {Arabidopsis thaliana};
           contains Pfam profiles PF02171: Piwi domain, PF02170:
           PAZ domain
          Length = 990

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 174 HVNIDIYRSILAMKYLIFYFCFEYEHF 254
           H N+++  S L   Y  +Y+C+ Y  F
Sbjct: 48  HQNLNLVASNLPSSYYYYYYCYFYSQF 74


>At1g03100.1 68414.m00285 pentatricopeptide (PPR) repeat-containing
           protein low similarity to CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 793

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -2

Query: 443 KSLDSHT*R*RYSVTTSFVEEKSQMLPALPAINYCTVHIYSSGILVIPSINLNK*QQTQN 264
           +SLDS+  +  YS+     EE  Q L     + Y ++ +  SG+ V  S  L K  +T+ 
Sbjct: 142 ESLDSNWLQKGYSLVEQAYEEGKQNLLEKEPLLYLSLALAKSGMAVPASTILRKLVETEE 201

Query: 263 Y 261
           Y
Sbjct: 202 Y 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,083,782
Number of Sequences: 28952
Number of extensions: 179767
Number of successful extensions: 270
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)