Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0048
(746 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr... 109 5e-25
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 27 2.1
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 27 3.8
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 26 5.0
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 26 5.0
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 26 5.0
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 26 6.6
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 6.6
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc... 26 6.6
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 25 8.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 8.7
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 25 8.7
>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 322
Score = 109 bits (261), Expect = 5e-25
Identities = 54/86 (62%), Positives = 66/86 (76%)
Frame = +1
Query: 256 FGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFAEHGIKKERILIKLASTWEGI 435
FG +IL I+PGRVS EVDAR SFD +I KA I L+ GI +ER+LIK+AST+EGI
Sbjct: 81 FGTKILAIVPGRVSTEVDARYSFDTQTTIEKARHLIKLYEAEGIGRERVLIKIASTYEGI 140
Query: 436 QAAKELEKKHGIHCNLTLLFSLYQVL 513
QAAK+LE++ GIHCNLTLLFS Q +
Sbjct: 141 QAAKQLEEE-GIHCNLTLLFSFVQAV 165
Score = 102 bits (244), Expect = 6e-23
Identities = 74/232 (31%), Positives = 115/232 (49%), Gaps = 7/232 (3%)
Frame = +2
Query: 20 MSALDQLKQHSTVV-ADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGK 196
MS+L+QLK TVV +DTGDFE++ +YKP DATTNPSLIL+A+ QY ++D A+ Y K
Sbjct: 1 MSSLEQLKATGTVVVSDTGDFESIAKYKPQDATTNPSLILAASKKPQYAALVDAAVDYAK 60
Query: 197 DNGSSIEEQVAETLDMLSVLLGVKY*KLFLVEYQWKLMQGYHLIRMQA*QKQLNL-SIYL 373
G SI Q+ D L + G K + ++ Y +K +L +Y
Sbjct: 61 AKGGSINSQIEIAFDRLLIEFGTKILAIVPGRVSTEVDARYSFDTQTTIEKARHLIKLYE 120
Query: 374 LNMVLKKKEF*LNWPPLGKEFKQPKSWRRSMESIVILHC-CSLCTKYCLC*SKCYTNITI 550
+ +++ + ++ ++ ++ E + HC +L + + N+T+
Sbjct: 121 AEGIGRERVL----IKIASTYEGIQAAKQLEEEGI--HCNLTLLFSFVQAVACAEANVTL 174
Query: 551 CWSYIGLVC*TYK----EDL*GPGRPRSSFRDQIYNYYQKFGYKTQVMGASF 694
++G + YK D P I+NYY+KFGYKT VMGASF
Sbjct: 175 ISPFVGRILDFYKAKNNRDYTAQEDPGVVSVSNIFNYYKKFGYKTIVMGASF 226
Score = 90.2 bits (214), Expect = 3e-19
Identities = 46/83 (55%), Positives = 54/83 (65%)
Frame = +3
Query: 498 FVPSIACAEANVTLISPFVGRILDWYVEHTKKTYEGQEDPGVVSVTKFTTITRSLVTRPK 677
FV ++ACAEANVTLISPFVGRILD+Y + Y QEDPGVVSV+ + +
Sbjct: 161 FVQAVACAEANVTLISPFVGRILDFYKAKNNRDYTAQEDPGVVSVSNIFNYYKKFGYKTI 220
Query: 678 *WVHLFRNTGEIRELAGCDLLTI 746
FRN GEI+ELAG D LTI
Sbjct: 221 VMGASFRNVGEIKELAGVDFLTI 243
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/42 (28%), Positives = 28/42 (66%)
Frame = +2
Query: 353 LNLSIYLLNMVLKKKEF*LNWPPLGKEFKQPKSWRRSMESIV 478
L+ SI + + ++ +F L+ P+ ++FK +S+RR ++S++
Sbjct: 362 LDTSISQIRVTHEQAKFLLSVIPVNQDFKALQSYRRILDSVI 403
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 323 NDNLASTSTDTRPGIIFNISHPKAHSAYPKFQP 225
N++L ++S TRP I ISHPK P+ P
Sbjct: 509 NESLEASSK-TRPPFISIISHPKGMRLLPRLFP 540
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 53 TVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDNGSSIEEQVAE 232
T +AD + + + D T L+L + G+E Y D A N S+EE + +
Sbjct: 273 TTIADYKEVAIQNKIEDDDTWTAQELVLLSEGVEMYSD--DWAKVASHVNTKSVEECILK 330
Query: 233 TLDMLS 250
L++ S
Sbjct: 331 FLNLPS 336
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -1
Query: 674 GSCNQTSGNSCKFGHGNYSGVFLALISLL--CMFNIPIQYT 558
G C Q SGN + G G S L LL C+ IP++ T
Sbjct: 141 GDCIQCSGNVGRSGSGELSIYATELPKLLSPCLHPIPVKLT 181
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 367 LFAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNL 483
L +G K I++ + T + IQ L +KH IHC+L
Sbjct: 788 LIKSNGFKGLPIVVIKSITRQLIQCLTLLNEKHVIHCDL 826
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 355 KFINLFAEHGIKKERI-LIKLASTWEGIQAA 444
+ ++LF+ HG++KE + L+ AS + IQ A
Sbjct: 216 RILSLFSFHGVRKESLELLWRASKYPNIQGA 246
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 461 FFSNSLAA*IPSQVEANLIKILSFLIPCSANKLI 360
FF+ SLA IP V + + + LIP A K++
Sbjct: 885 FFAQSLATPIPEPVPVDNMPTFTVLIPHYAEKIL 918
>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 349
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 533 NICFSTGNTWYKENNSVRLQWIPC 462
N+CF+ Y +N V L+ +PC
Sbjct: 317 NLCFNLSRNGYMKNFGVSLKILPC 340
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 388 KKERILIKLASTWEGIQAAKEL 453
+K+ I + + WEG+Q AKEL
Sbjct: 299 EKKTITLHNGNQWEGLQMAKEL 320
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 8.7
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Frame = +2
Query: 29 LDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGK---- 196
LDQLK H T+V GD + + +P A E + L KA++ G
Sbjct: 1979 LDQLKIHETLVHSLGDIHEKARKLLAEFSASP-----AGRFEWFDGYLLKAVEEGHWFVL 2033
Query: 197 DNGSSIEEQVAETLDMLSVLLGV 265
DN + V + L+ L GV
Sbjct: 2034 DNANLCSPAVLDRLNSLLEHKGV 2056
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 244 AECAFGCEILKIIPGRVSVEVDARLSFD 327
AE AFG +L R ++E+D RL +
Sbjct: 824 AEAAFGSNVLAASTARHNLEIDLRLMLE 851
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,424,427
Number of Sequences: 5004
Number of extensions: 77378
Number of successful extensions: 234
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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