Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0048
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312...    78   6e-15
12_01_0740 + 6646471-6649407                                           32   0.42 
12_01_0722 + 6355972-6359031                                           32   0.42 
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721...    31   0.97 
07_03_1547 + 27623945-27625612                                         29   3.9  
11_02_0045 - 7705728-7707581                                           28   9.1  

>08_01_0355 -
           3122374-3122520,3122912-3123047,3123124-3123221,
           3123724-3123801,3123876-3123945,3124452-3124516,
           3124606-3124686,3124822-3124926,3125002-3125085,
           3125175-3125250,3125358-3125436,3125526-3125646,
           3125768-3125827
          Length = 399

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 33/83 (39%), Positives = 57/83 (68%)
 Frame = +1

Query: 259 GCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFAEHGIKKERILIKLASTWEGIQ 438
           G E+  ++PGRVS E+DARL++D    I +  + + L+++H +  ER+L K+ +TW+GI+
Sbjct: 146 GAEMAHLVPGRVSTEIDARLAYDTQGIIQRVHELLKLYSDHDVLSERLLFKIPATWQGIE 205

Query: 439 AAKELEKKHGIHCNLTLLFSLYQ 507
           A++ LE + GI  +LT ++S  Q
Sbjct: 206 ASRLLESE-GIQTHLTFVYSFAQ 227



 Score = 32.3 bits (70), Expect = 0.42
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
 Frame = +3

Query: 489 VVLFVPSIACAEANVTLISPFVGRILDWYVEHT-----KKTYEGQEDPGVVSVTKFTTIT 653
           V  F  + A A+A  +++  FVGR+ DW   H+      +  +  ED G+    K     
Sbjct: 222 VYSFAQAAAAAQAGASVVQIFVGRVRDWARTHSGDPEIDEALKKGEDAGLALAKKVYAYI 281

Query: 654 RSLVTRPK*WVHLFRNTGEIRELAGCDLL 740
                + K      RN  ++  L G D +
Sbjct: 282 HKNGYKTKLMAAAIRNKQDVFSLLGIDYI 310


>12_01_0740 + 6646471-6649407
          Length = 978

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 24/73 (32%), Positives = 33/73 (45%)
 Frame = -2

Query: 289 DQE*FLIFHTQKHTQHIQSFSHLFFNGASIILSIFNSFIKNVLILFHTSSREY*AWICSS 110
           D E  ++ H   H Q  Q  + L + G  I +S     I   L+L   S+ E+   I SS
Sbjct: 774 DNETLVMEHQYSHGQTYQFTAALTYKGNDITISK----ILRSLVLIDVSNNEFDGSIPSS 829

Query: 109 ICRLIFFHGLKIS 71
           I  L   HGL +S
Sbjct: 830 IGELALLHGLNMS 842


>12_01_0722 + 6355972-6359031
          Length = 1019

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 24/73 (32%), Positives = 33/73 (45%)
 Frame = -2

Query: 289  DQE*FLIFHTQKHTQHIQSFSHLFFNGASIILSIFNSFIKNVLILFHTSSREY*AWICSS 110
            D E  ++ H   H Q  Q  + L + G  I +S     I   L+L   S+ E+   I SS
Sbjct: 815  DNETLVMEHQYSHGQTYQFTAALTYKGNDITISK----ILRSLVLIDVSNNEFDGSIPSS 870

Query: 109  ICRLIFFHGLKIS 71
            I  L   HGL +S
Sbjct: 871  IGELALLHGLNMS 883


>12_02_0134 - 14071190-14071435,14071800-14071988,14072114-14072194,
            14072261-14072404,14072528-14072761,14072836-14073981,
            14074863-14074922,14075178-14075420,14075509-14075607,
            14076196-14076367,14076597-14076735,14077514-14077624,
            14077695-14077797,14077885-14077962,14078054-14078122,
            14078203-14078275,14078891-14078975,14079473-14079536,
            14079963-14080073,14080139-14080213,14080306-14080398,
            14080982-14081056,14081172-14081261
          Length = 1259

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -1

Query: 371  NKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHP 258
            N +++++AF  +A  S+ N+ STS     G + +I+ P
Sbjct: 897  NSVVDILAFPFVAVQSSPNMPSTSASINSGFLLSIASP 934


>07_03_1547 + 27623945-27625612
          Length = 555

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 353 IAFAMLASLSNDNLASTSTDTRPGIIFNISHPKAHSAYPKFQ 228
           +A A  + + ND+L    T TR  I F     + HSA   FQ
Sbjct: 115 VAAAPCSGMGNDSLCCDRTSTRADICFARGDVRMHSASASFQ 156


>11_02_0045 - 7705728-7707581
          Length = 617

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 515 GNTWYKENNSVRLQWIPCFFSNS 447
           GN W +   S+R QW+P +  +S
Sbjct: 361 GNEWLQTIYSIRHQWVPAYLKDS 383


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,966,288
Number of Sequences: 37544
Number of extensions: 448337
Number of successful extensions: 1127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)