Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0048
(746 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3138| Best HMM Match : Transaldolase (HMM E-Value=0) 101 5e-22
SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.99
SB_56029| Best HMM Match : SEA (HMM E-Value=4.7) 30 1.7
SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0) 29 4.0
SB_6765| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_48197| Best HMM Match : Neuromodulin (HMM E-Value=2.5) 29 5.3
SB_40651| Best HMM Match : Neuromodulin (HMM E-Value=1.2) 29 5.3
SB_49926| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_14317| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_39812| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-09) 28 7.0
>SB_3138| Best HMM Match : Transaldolase (HMM E-Value=0)
Length = 224
Score = 101 bits (243), Expect = 5e-22
Identities = 46/66 (69%), Positives = 56/66 (84%)
Frame = +1
Query: 316 LSFDKDASIAKAIKFINLFAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLF 495
LSFD +AS+AKA+KFI L+ E GI KER+LIKL+STWEGIQAA+ LE+ HGIHCNLTLLF
Sbjct: 2 LSFDVEASVAKALKFIELYKEAGISKERVLIKLSSTWEGIQAARILERDHGIHCNLTLLF 61
Query: 496 SLYQVL 513
+ Q +
Sbjct: 62 AFVQAV 67
Score = 86.6 bits (205), Expect = 2e-17
Identities = 46/84 (54%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Frame = +3
Query: 498 FVPSIACAEANVTLISPFVGRILDWYVEHT-KKTYEGQEDPGVVSVTKFTTITRSLVTRP 674
FV ++ACAEA VTLISPFVGRI DWYV T +K YE EDPGV SVT + +
Sbjct: 63 FVQAVACAEAGVTLISPFVGRIYDWYVAKTGQKEYEPHEDPGVKSVTAIYNYYKKFGYKT 122
Query: 675 K*WVHLFRNTGEIRELAGCDLLTI 746
FRN G+I L GCD LTI
Sbjct: 123 VVMGASFRNVGQITGLTGCDKLTI 146
>SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 931
Score = 31.1 bits (67), Expect = 0.99
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 674 GSCNQTSGNSCKFGHGNYSGVFLALISLLCM 582
G CN TS NSC++ GN V L ++ +L M
Sbjct: 184 GLCNSTSVNSCEYTSGNKGYVPLFVLGMLVM 214
>SB_56029| Best HMM Match : SEA (HMM E-Value=4.7)
Length = 111
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +1
Query: 259 GCEILKIIPGRVSVEVDARLSFDKDASIA 345
GCE+L+ PG SV VDA + FDK A+++
Sbjct: 50 GCEVLRFRPG--SVVVDAIVYFDKVANVS 76
>SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 1125
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 194 KDNGSSIEEQVAETLDMLSVLLGVKY*KLFLVEYQWKLMQGYHL 325
K + + +TL ++V LG KY L E + L +GY L
Sbjct: 695 KSRARDVRDAARDTLCRIAVTLGTKYLSFVLKEMRTALTRGYQL 738
>SB_6765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 194 KDNGSSIEEQVAETLDMLSVLLGVKY*KLFLVEYQWKLMQGYHL 325
K + + +TL ++V LG KY L E + L +GY L
Sbjct: 11 KSRARDVRDAARDTLCRIAVTLGTKYLSFVLKEMRTALTRGYQL 54
>SB_48197| Best HMM Match : Neuromodulin (HMM E-Value=2.5)
Length = 394
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/29 (65%), Positives = 20/29 (68%)
Frame = +3
Query: 588 KKTYEGQEDPGVVSVTKFTTITRSLVTRP 674
KKTYE E GV SVTK TT TR+ TRP
Sbjct: 92 KKTYEIGEAGGVTSVTK-TTETRT-ETRP 118
>SB_40651| Best HMM Match : Neuromodulin (HMM E-Value=1.2)
Length = 1156
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/29 (65%), Positives = 20/29 (68%)
Frame = +3
Query: 588 KKTYEGQEDPGVVSVTKFTTITRSLVTRP 674
KKTYE E GV SVTK TT TR+ TRP
Sbjct: 92 KKTYEIGEAGGVTSVTK-TTETRT-ETRP 118
>SB_49926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 428 SQVEANLIKILSFLIPCSANKLINLIAFAMLASLSNDN 315
+ V ANLI + F + S +LINL + ++A S +N
Sbjct: 228 NNVAANLISSMRFYVMDSIGRLINLNGYRIVADNSGEN 265
>SB_14317| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 419 PLGKEFKQPKSWRRSMESIVILHCCSLCTKYCLC*SKCYTNIT 547
P G + KQ +S R + + L+ C L T Y +C K IT
Sbjct: 238 PTGHKAKQSRSQRDELSLLFELYQCQLSTSYRVCPVKPTNRIT 280
>SB_39812| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-09)
Length = 302
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 703 VLRKRCTHYLGLVTKLLVIVVNLVTETTPGSSWPS 599
V+ C + + LVT + +V TETT + WPS
Sbjct: 218 VMGSLCVYLVFLVTYIPTLVTMAYTETTNDTYWPS 252
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,787,998
Number of Sequences: 59808
Number of extensions: 544214
Number of successful extensions: 1268
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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