Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0048
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical ...   121   5e-28
AC006729-2|AAM15613.1|  165|Caenorhabditis elegans Hypothetical ...    91   1e-18
AC084159-6|AAK39360.1|   97|Caenorhabditis elegans Hypothetical ...    33   0.28 
Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81489-12|CAJ30224.1|  142|Caenorhabditis elegans Hypothetical p...    28   6.1  
AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    28   6.1  
U43283-1|AAC69025.1|  412|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AF067214-8|AAC17008.1|   69|Caenorhabditis elegans Hypothetical ...    28   8.1  
AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical...    28   8.1  

>AC006729-1|AAK93861.1|  319|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8a protein.
          Length = 319

 Score =  121 bits (292), Expect = 5e-28
 Identities = 59/86 (68%), Positives = 68/86 (79%)
 Frame = +1

Query: 256 FGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFAEHGIKKERILIKLASTWEGI 435
           FG EILK IPGRVS EVDARLSFD  ASI +A+  I  + + GI K+RILIKLASTWEGI
Sbjct: 80  FGKEILKTIPGRVSTEVDARLSFDTQASIDRALGLIAQYEKEGISKDRILIKLASTWEGI 139

Query: 436 QAAKELEKKHGIHCNLTLLFSLYQVL 513
           +AAK LE KHGIHCN+TLLF+  Q +
Sbjct: 140 RAAKFLESKHGIHCNMTLLFNFEQAV 165



 Score = 95.5 bits (227), Expect = 4e-20
 Identities = 44/81 (54%), Positives = 61/81 (75%)
 Frame = +2

Query: 20  MSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKD 199
           MS L+QLK  S VVADTGDF A+KE++PTDATTNPSLIL+A+ MEQY  ++D+++ Y K+
Sbjct: 1   MSVLEQLKGASVVVADTGDFNAIKEFQPTDATTNPSLILAASKMEQYAALIDQSVAYAKE 60

Query: 200 NGSSIEEQVAETLDMLSVLLG 262
           + S  +E +   +D L V+ G
Sbjct: 61  HASGHQEVLQAAMDRLFVVFG 81



 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 44/84 (52%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
 Frame = +3

Query: 498 FVPSIACAEANVTLISPFVGRILDWYVEHT-KKTYEGQEDPGVVSVTKFTTITRSLVTRP 674
           F  ++ACAE+ VTLISPFVGRI+DW+V++T +K Y  ++DPGVVSVT+     +    + 
Sbjct: 161 FEQAVACAESGVTLISPFVGRIMDWFVKNTDQKAYTRKDDPGVVSVTRIFNYYKKYDYKT 220

Query: 675 K*WVHLFRNTGEIRELAGCDLLTI 746
           +     FRNT EI+ L GCDLLTI
Sbjct: 221 QVMAASFRNTEEIKGLVGCDLLTI 244


>AC006729-2|AAM15613.1|  165|Caenorhabditis elegans Hypothetical
           protein Y24D9A.8b protein.
          Length = 165

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 44/84 (52%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
 Frame = +3

Query: 498 FVPSIACAEANVTLISPFVGRILDWYVEHT-KKTYEGQEDPGVVSVTKFTTITRSLVTRP 674
           F  ++ACAE+ VTLISPFVGRI+DW+V++T +K Y  ++DPGVVSVT+     +    + 
Sbjct: 7   FEQAVACAESGVTLISPFVGRIMDWFVKNTDQKAYTRKDDPGVVSVTRIFNYYKKYDYKT 66

Query: 675 K*WVHLFRNTGEIRELAGCDLLTI 746
           +     FRNT EI+ L GCDLLTI
Sbjct: 67  QVMAASFRNTEEIKGLVGCDLLTI 90


>AC084159-6|AAK39360.1|   97|Caenorhabditis elegans Hypothetical
           protein Y73B3A.2 protein.
          Length = 97

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = +3

Query: 693 FRNTGEIRELAGCDLLTI 746
           FRNT EI+ L GCDLLTI
Sbjct: 5   FRNTEEIKGLVGCDLLTI 22


>Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical
           protein C33D9.8 protein.
          Length = 604

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +1

Query: 301 EVDARLSFDKDASIAKAIKFINLFAEHGIKKERILIKLASTWEGIQAAKELEK 459
           E  A+L+ +KD  I K  + I L  E+ +KK++ + +L   +E     K L+K
Sbjct: 254 EASAQLN-EKDLVIEKITRKIELLQENNVKKDQRIYELEQCFESEDYCKILQK 305


>Z81489-12|CAJ30224.1|  142|Caenorhabditis elegans Hypothetical
           protein C55A1.15 protein.
          Length = 142

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 289 DQE*FLIFHTQKHTQHIQSFSHLFFNGASIILSIFNS-FIKNVLI 158
           D+E  LI+   KH   +    +L F  ASIILS+F   ++ NV+I
Sbjct: 56  DKE-ILIYPITKHFCQMVKIFYLIFVFASIILSVFEKLYLLNVII 99


>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 268 protein.
          Length = 881

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -1

Query: 308 STSTDTRPGIIFNISHPKAHSAYPKFQPL 222
           S ST  RP +I   SHP   S  PK   L
Sbjct: 815 SVSTSARPSLINTSSHPMVRSPLPKMSVL 843


>U43283-1|AAC69025.1|  412|Caenorhabditis elegans Hypothetical
           protein T25G12.5 protein.
          Length = 412

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 226 G*NFGYAECAFGCEILKIIPGRVSVEVDARLSFDKDASIAK 348
           G +F  AE A  CE+ +++  +   EVDA       ASIAK
Sbjct: 305 GVSFLLAEMAINCELARLMTYKSGAEVDAGRPGSYYASIAK 345


>AF067214-8|AAC17008.1|   69|Caenorhabditis elegans Hypothetical
           protein F56C3.8 protein.
          Length = 69

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 392 FLIPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNI 267
           F++    N ++ LI      SL +D L   +TD +PG++  +
Sbjct: 5   FIVTKMKNTVLLLILALFFISLRDDGLQMPNTDLKPGLLMQM 46


>AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical
           protein Y54G2A.21 protein.
          Length = 967

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +2

Query: 161 QHILDKAIKYGKDNGSSIEEQVAETLDMLSVLLGVKY 271
           +H++  A+  G DN SS+++ + + L+ L  L  ++Y
Sbjct: 437 RHVMVIAVYDGSDNYSSLKKFIPDVLEQLGKLTKIRY 473


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,589,029
Number of Sequences: 27780
Number of extensions: 418724
Number of successful extensions: 1184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)