Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0048
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.7  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    23   3.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   4.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.3  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   9.3  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 629 GNYSGVFLALISLLCMFNIP 570
           G+YS V L + +LL +F+IP
Sbjct: 76  GSYSSVSLQVANLLRLFHIP 95


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 629 GNYSGVFLALISLLCMFNIP 570
           G+YS V L + +LL +F+IP
Sbjct: 166 GSYSSVSLQVANLLRLFHIP 185


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 257 KAHSAYPKFQPLVLQWSFHYPFHI 186
           +    Y +FQ L L+  FHY  ++
Sbjct: 10  RGRQTYTRFQTLELEKEFHYNHYL 33


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 584 YKEDL*GPGRPRSSFRDQIYNYYQKFGYKTQVMG 685
           +K ++    RPRSSF+   + Y   F +   V G
Sbjct: 204 FKAEVGSKLRPRSSFQGPPFTYRYGFSFLLYVSG 237


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 147 VWNSISTFLIKLLNMERIMEAPLKNKWL 230
           +W+  ST++ K+ N +   +  L+N WL
Sbjct: 318 IWDYDSTYIPKVKNKKAGSKHLLQNTWL 345


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 223 LFFNGASIILSIFNSFIKNVLILFHTS 143
           LF N AS+ + IFN  I  +L++ H S
Sbjct: 268 LFLNMASVFMRIFN-LICMMLLIGHWS 293


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = +3

Query: 132 YSLLLVWNSISTFLIKLLNMERIMEAP 212
           Y + L +NS+  F    + +++++E+P
Sbjct: 21  YFIFLYFNSLVRFRRFTIELDKVLESP 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,068
Number of Sequences: 438
Number of extensions: 5261
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)