Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0047
         (284 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   0.84 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   2.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   3.4  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   3.4  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   3.4  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    20   5.9  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    19   7.8  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 0.84
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 176 RIPWNSNAQAEKKTLPGPLG 117
           +IPW+ NA+A  K   G  G
Sbjct: 330 QIPWDKNAEALAKWANGQTG 349


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 130 PDLSAASSGHFGLPRRTLVFKDEG 59
           P +S++     G      VFKDEG
Sbjct: 2   PHVSSSGGDDLGSTDEVKVFKDEG 25



 Score = 20.6 bits (41), Expect = 3.4
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 255 FQGPQRVSGHRRKC 214
           F GP R++   R+C
Sbjct: 602 FHGPHRLAARSRRC 615


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 255 FQGPQRVSGHRRKC 214
           F GP R++   R+C
Sbjct: 494 FHGPHRLAARSRRC 507


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 16  FLFRNPAAEPFQ*SFPRL*KRVFDGVTQSGLKTPPRG 126
           F+   P+   F  + P L   +  G + S   TPP G
Sbjct: 60  FINSQPSMAEFMTALPHLSGDMTHGASISPQNTPPAG 96


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 16  FLFRNPAAEPFQ*SFPRL*KRVFDGVTQSGLKTPPRG 126
           F+   P+   F  + P L   +  G + S   TPP G
Sbjct: 60  FINSQPSMAEFMTALPHLSGDMTHGASISPQNTPPAG 96


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 270 HPSPEFQGPQRVSGHRRK 217
           +P PE   P+R S   +K
Sbjct: 403 YPDPEKYDPERFSDENKK 420


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 43  VPLPGSGIGTGFP 5
           +P+P  G G G P
Sbjct: 94  MPMPALGFGLGHP 106


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,920
Number of Sequences: 336
Number of extensions: 1346
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  4897022
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)